Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

26941605 .. 26943290

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36723.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAAGTGTGGCCATATATTGGCCAGTATTTGACTGTCCTGCTGACACCAACTCATCTAGCCATTGTGATGGAGTATGCTGCTGGAGGAGAACTCTATACGAGAATATGCAAGGCCGGCAGATTTAGTGAGAATGAGGCAAGGTTTTTCTTCCAGCAATTGATATCAGGAGTTGCTTACTGCCATACAATGAAAGTATGTCATAGGGACCTTAAGCTTGAAAATGCGCTCTTAGATGACAGCACAGCACCTCGGGTGAAAATATGCGATTTTGGATCCTCAAAGTCACTACAACATTCTCGGCAAAAATCTACTGTCGGAACACCGGCTTATATTGCACCTGAGGTCATCACTGAAACACAATATGATGGAGCGATTGCAGATGTTTGGTCTTGTGGAGTCTCCCTATATGTTATGATTGTTGGAGCATATCCCTTTGAAGATCCTCGGGACCATTTGAACTTTAGAAAAACAATTCTGCGGACGCTTACTGTATGCTACTCAATCCCTGATAATGTACGAGTTTCTGAGGAATGTAGAGACTTGCTGGCTAAGATATTTGTGGCGAAGCCGGAAAAGAGAATTAGACTTCCAGAAATTAAGAAACACTGTTGGTTCTTAAAGAATCTACCTATGGAAATGTGGGAAGGAGGAAGTTGGGAAAGCAATGAAGTAAACTATCCATCCCAAAGCATTGAAGAAGTCCAGTCCATAATACAAGAGGCAAGAATACCTTTAATGGTCCCAACTGTCAGTAGGCATTGCGTTGGAAGCAGCATGGCTTTTGACGATGCTGATGTTGGAGATATTCAAACAAGTTGTAAATTCTCTGCTCAAATGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

282

Amino Acids

31.84

Weight (kDa)

5.84

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 206	4.7e-53	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	7 - 202	1.1e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	1 cut(s)	481
AclWI	GGATC	3 cut(s)	270, 283, 437
AcoI	YGGCCR	2 cut(s)	11, 22
AcsI	RAATTY	1 cut(s)	824
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	1 cut(s)	20
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	5 cut(s)	221, 440, 460, 698, 812
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	406, 534
AlwI	GGATC	3 cut(s)	270, 283, 437
Ama87I	CYCGRG	2 cut(s)	252, 447
AoxI	GGCC	3 cut(s)	11, 22, 114
ApeKI	GCWGC	2 cut(s)	80, 774
ApoI	RAATTY	1 cut(s)	824
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	3 cut(s)	208, 451, 742
AsuHPI	GGTGA	1 cut(s)	268
AvaI	CYCGRG	2 cut(s)	252, 447
AvaII	GGWCC	3 cut(s)	208, 451, 742
AxyI	CCTNAGG	1 cut(s)	342
BalI	TGGCCA	2 cut(s)	13, 24
BamHI	GGATCC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	67, 786
BccI	CCATC	3 cut(s)	64, 362, 691
BcoDI	GTCTC	2 cut(s)	406, 534
BfaI	CTAG	1 cut(s)	59
BfrI	CTTAAG	1 cut(s)	212
BisI	GCNGC	2 cut(s)	81, 775
BlsI	GCNGC	2 cut(s)	82, 776
Bme18I	GGWCC	3 cut(s)	208, 451, 742
BmeT110I	CYCGRG	2 cut(s)	252, 447
BmgT120I	GGNCC	3 cut(s)	208, 451, 742
BmiI	GGNNCC	4 cut(s)	209, 277, 452, 744
BmsI	GCATC	1 cut(s)	781
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
BpmI	CTGGAG	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	251, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse118I	RCCGGY	2 cut(s)	116, 325
Bse1I	ACTGG	2 cut(s)	25, 706
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	2 cut(s)	673, 760
BseDI	CCNNGG	2 cut(s)	251, 446
BseGI	GGATG	1 cut(s)	683
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	2 cut(s)	673, 760
BseMII	CTCAG	2 cut(s)	333, 519
BseNI	ACTGG	2 cut(s)	25, 706
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	67, 786
BshFI	GGCC	3 cut(s)	13, 24, 116
BsiHKCI	CYCGRG	2 cut(s)	252, 447
BsiSI	CCGG	3 cut(s)	117, 326, 572
BslFI	GGGAC	3 cut(s)	221, 464, 728
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	406, 534
BsmFI	GGGAC	3 cut(s)	221, 464, 728
BsnI	GGCC	3 cut(s)	13, 24, 116
BsoBI	CYCGRG	2 cut(s)	252, 447
Bsp143I	GATC	2 cut(s)	275, 442
BspACI	CCGC	1 cut(s)	481
BspANI	GGCC	3 cut(s)	13, 24, 116
BspCNI	CTCAG	2 cut(s)	334, 520
BspLI	GGNNCC	4 cut(s)	209, 277, 452, 744
BspPI	GGATC	3 cut(s)	270, 283, 437
BspTI	CTTAAG	1 cut(s)	212
BsrDI	GCAATG	2 cut(s)	673, 760
BsrFI	RCCGGY	2 cut(s)	116, 325
BsrI	ACTGG	2 cut(s)	25, 706
BssAI	RCCGGY	2 cut(s)	116, 325
BssECI	CCNNGG	2 cut(s)	251, 446
BssMI	GATC	2 cut(s)	275, 442
Bst4CI	ACNGT	5 cut(s)	37, 316, 493, 611, 751
BstAFI	CTTAAG	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	118, 549
BstDEI	CTNAG	4 cut(s)	232, 342, 528, 552
BstF5I	GGATG	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	278, 445
BstMAI	GTCTC	2 cut(s)	406, 534
BstMBI	GATC	2 cut(s)	275, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 335, 771
BstV1I	GCAGC	2 cut(s)	67, 786
BstX2I	RGATCY	2 cut(s)	275, 442
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	2 cut(s)	275, 442
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	13, 24, 116
BtsCI	GGATG	1 cut(s)	683
BtsIMutI	CAGTG	2 cut(s)	351, 607
Cac8I	GCNNGC	2 cut(s)	118, 549
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	2 cut(s)	116, 325
Cfr13I	GGNCC	3 cut(s)	208, 451, 742
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	518
CviAII	CATG	1 cut(s)	778
CviJI	RGCY	9 cut(s)	13, 24, 62, 116, 217, 329, 551, 571, 782
CviKI_1	RGCY	9 cut(s)	13, 24, 62, 116, 217, 329, 551, 571, 782
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	4 cut(s)	232, 342, 528, 552
DpnI	GATC	2 cut(s)	277, 444
DpnII	GATC	2 cut(s)	275, 442
EaeI	YGGCCR	2 cut(s)	11, 22
Eco32I	GATATC	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	208, 451, 742
Eco81I	CCTNAGG	1 cut(s)	342
Eco88I	CYCGRG	2 cut(s)	252, 447
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	165
FaeI	CATG	1 cut(s)	781
FalI	AAGNNNNNCTT	2 cut(s)	718, 750
FaqI	GGGAC	3 cut(s)	221, 464, 728
FatI	CATG	1 cut(s)	777
Fnu4HI	GCNGC	2 cut(s)	81, 775
FokI	GGATG	1 cut(s)	670
Fsp4HI	GCNGC	2 cut(s)	81, 775
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	2 cut(s)	81, 775
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	13, 24, 116
HapII	CCGG	3 cut(s)	117, 326, 572
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	781
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	399, 625
HpaII	CCGG	3 cut(s)	117, 326, 572
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	2 cut(s)	320, 529
Hpy188III	TCNNGA	3 cut(s)	168, 449, 593
Hpy8I	GTNNAC	1 cut(s)	676
HpyAV	CCTTC	1 cut(s)	641
HpyCH4III	ACNGT	5 cut(s)	37, 316, 493, 611, 751
HpyCH4V	TGCA	3 cut(s)	111, 338, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 335, 771
HpyF3I	CTNAG	4 cut(s)	232, 342, 528, 552
Hsp92II	CATG	1 cut(s)	781
HspAI	GCGC	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	275, 442
LmnI	GCTCC	2 cut(s)	371, 425
Lsp1109I	GCAGC	2 cut(s)	67, 786
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	2 cut(s)	277, 444
MboI	GATC	2 cut(s)	275, 442
MboII	GAAGA	3 cut(s)	142, 452, 710
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	2 cut(s)	275, 442
MlsI	TGGCCA	2 cut(s)	13, 24
MluCI	AATT	5 cut(s)	158, 474, 582, 597, 824
MluNI	TGGCCA	2 cut(s)	13, 24
MlyI	GAGTC	1 cut(s)	408
MmeI	TCCRAC	4 cut(s)	298, 403, 748, 781
MnlI	CCTC	9 cut(s)	80, 130, 261, 289, 337, 456, 523, 644, 715
Mox20I	TGGCCA	2 cut(s)	13, 24
MroNI	GCCGGC	1 cut(s)	116
MscI	TGGCCA	2 cut(s)	13, 24
MseI	TTAA	4 cut(s)	213, 600, 620, 737
MslI	CAYNNNNRTG	1 cut(s)	68
Msp20I	TGGCCA	2 cut(s)	13, 24
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	3 cut(s)	117, 326, 572
MunI	CAATTG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	117, 335, 771
NaeI	GCCGGC	1 cut(s)	118
NdeII	GATC	2 cut(s)	275, 442
NgoMIV	GCCGGC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	781
NlaIV	GGNNCC	4 cut(s)	209, 277, 452, 744
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	625
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	82, 776
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspN4I	GGNNCC	4 cut(s)	209, 277, 452, 744
PspPI	GGNCC	3 cut(s)	208, 451, 742
PspPPI	RGGWCCY	1 cut(s)	208
PsuI	RGATCY	2 cut(s)	275, 442
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	4 cut(s)	213, 600, 620, 737
SatI	GCNGC	2 cut(s)	81, 775
Sau3AI	GATC	2 cut(s)	275, 442
Sau96I	GGNCC	3 cut(s)	208, 451, 742
SchI	GAGTC	1 cut(s)	408
SetI	ASST	8 cut(s)	146, 213, 219, 253, 343, 348, 634, 736
SfaNI	GCATC	1 cut(s)	781
SinI	GGWCC	3 cut(s)	208, 451, 742
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	5 cut(s)	158, 474, 582, 597, 824
SsiI	CCGC	1 cut(s)	481
SspMI	CTAG	1 cut(s)	59
TaaI	ACNGT	5 cut(s)	37, 316, 493, 611, 751
TasI	AATT	5 cut(s)	158, 474, 582, 597, 824
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	4 cut(s)	213, 600, 620, 737
Tru9I	TTAA	4 cut(s)	213, 600, 620, 737
TscAI	CASTG	2 cut(s)	358, 614
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	2 cut(s)	80, 774
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	206, 684
TspRI	CASTG	2 cut(s)	358, 614
Van91I	CCANNNNNTGG	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	3 cut(s)	208, 451, 742
XapI	RAATTY	1 cut(s)	824
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.