Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

45551914 .. 45554922

Gene Structure 3009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1373000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGAGGTATGAGATTGTTAAAGATATTGGGTCTGGGAATTTTGGGGTGGCAAGGCTGGTCAGAGACAAGCTCACCAGAGAACTCTATGCTGTCAAGTTCATTGAGAGAGGACACAAGATAGATGAACACGTTCAAAGGGAAATCTTGAACCACAGATCACTCAAGCATCCGAATATCGTTCGATTCAAAGAGGTCCTTCTGACACCAACTCATCTAGCCATAGTTATGGAGTACGCGGCTGGGGGAGAACTCTTCGGGAGAATATGCAATGCTGGCAGATTTAGTGAGGATGAGGCAAGGTTTTTCTTCCAGCAGTTGATATCAGGAGTTAGTTACTGTCATTCAATGCAAATCTGTCATAGAGACCTTAAGCTTGAAAACACACTCTTAGACGGCAGTACAGCACCGCGTGTAAAAATATGTGATTTCGGATACTCAAAGTCATTATTGCATTCTCAGCCTAAATCTACTGTAGGAACACCGGCTTATATAGCACCTGAAGTCCTATCTAAAAAACAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATATGTGATGATAGTTGGAGCATATCCCTTTGAAGATCCCAAAGACCCTAGAAACTTTACAAAAACAATTGGGCGGATTCTTAGTGTGCAGTACTCAGTTCCAGATAATGTCCTTGTTTCAATTGAATGTAGACATCTCTTATCTCATATCTTTGTAGCAAACCCTGAAGAGAGAATAACTATCCCAGAAATCAAAAGCCACCCTTGGTTTCTAAAGAACTTACCTATGGAAATGATGGAAGGAGGAAGTTGGCAGTGCAACGATGTAAATAATCCGTGGCAAAGCGTTGAAGAAGTTCTGTCCATAATACAAGAGGCAAGGAAACCATTAAACGTCCCGAATGCCAGTAGGCATCTCATCGGAAGCAGCAGCATGGATGTTGATGATTTTGAAGCCTATGTTGAAGATTTTGAAACAAGTGGTGATTTTGTGTTGCCAAATATGAGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

340

Amino Acids

38.52

Weight (kDa)

5.97

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 259	1.5e-71	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 255	6.2e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	697
AccII	CGCG	2 cut(s)	239, 412
AciI	CCGC	3 cut(s)	239, 410, 640
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	2 cut(s)	522, 753
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	3 cut(s)	236, 403, 659
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	130
AluBI	AGCT	2 cut(s)	73, 376
AluI	AGCT	2 cut(s)	73, 376
Alw26I	GTCTC	2 cut(s)	60, 360
AlwI	GGATC	1 cut(s)	596
ApeKI	GCWGC	2 cut(s)	933, 936
ApoI	RAATTY	1 cut(s)	40
Asp700I	GAANNNNTTC	2 cut(s)	132, 861
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	3 cut(s)	67, 553, 1001
AvaII	GGWCC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	945, 948
BccI	CCATC	2 cut(s)	521, 796
BceAI	ACGGC	1 cut(s)	412
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	60, 360
BfaI	CTAG	2 cut(s)	218, 615
BfmI	CTRYAG	1 cut(s)	474
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	3 cut(s)	240, 934, 937
BlsI	GCNGC	3 cut(s)	241, 935, 938
BmcAI	AGTACT	1 cut(s)	659
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmsI	GCATC	2 cut(s)	178, 928
BplI	GAGNNNNNCTC	2 cut(s)	57, 89
BpuEI	CTTGAG	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	770, 842
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	912
Bse3DI	GCAATG	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	770, 842
BseGI	GGATG	3 cut(s)	169, 298, 949
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	473, 675
BseNI	ACTGG	1 cut(s)	912
BseXI	GCAGC	2 cut(s)	945, 948
BseYI	CCCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	674
Bsh1236I	CGCG	2 cut(s)	239, 412
BsiSI	CCGG	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	887
BsmAI	GTCTC	2 cut(s)	60, 360
BsmFI	GGGAC	1 cut(s)	887
BsmI	GAATGC	2 cut(s)	454, 913
Bso31I	GGTCTC	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	158, 601
BspACI	CCGC	3 cut(s)	239, 410, 640
BspCNI	CTCAG	2 cut(s)	472, 674
BspFNI	CGCG	2 cut(s)	239, 412
BspPI	GGATC	1 cut(s)	596
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	912
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	770, 842
BssMI	GATC	2 cut(s)	158, 601
BssT1I	CCWWGG	1 cut(s)	770
Bst4CI	ACNGT	2 cut(s)	341, 475
Bst6I	CTCTTC	2 cut(s)	260, 729
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	4 cut(s)	391, 459, 647, 661
BstDSI	CCRYGG	1 cut(s)	842
BstF5I	GGATG	3 cut(s)	169, 298, 949
BstFNI	CGCG	2 cut(s)	239, 412
BstKTI	GATC	2 cut(s)	161, 604
BstMAI	GTCTC	2 cut(s)	60, 360
BstMBI	GATC	2 cut(s)	158, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 460, 494
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	2 cut(s)	239, 412
BstV1I	GCAGC	2 cut(s)	945, 948
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	601
BsuI	GTATCC	1 cut(s)	428
BtgI	CCRYGG	1 cut(s)	842
BtsCI	GGATG	3 cut(s)	169, 298, 949
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	1 cut(s)	827
Cac8I	GCNNGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	3 cut(s)	235, 402, 658
CviAII	CATG	1 cut(s)	940
CviJI	RGCY	9 cut(s)	58, 73, 221, 242, 376, 463, 488, 765, 962
CviKI_1	RGCY	9 cut(s)	58, 73, 221, 242, 376, 463, 488, 765, 962
CviQI	GTAC	3 cut(s)	235, 402, 658
DdeI	CTNAG	4 cut(s)	391, 459, 647, 661
DpnI	GATC	2 cut(s)	160, 603
DpnII	GATC	2 cut(s)	158, 601
DraIII	CACNNNGTG	1 cut(s)	413
Eam1104I	CTCTTC	2 cut(s)	260, 729
EarI	CTCTTC	2 cut(s)	260, 729
EciI	GGCGGA	1 cut(s)	655
Eco130I	CCWWGG	1 cut(s)	770
Eco31I	GGTCTC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	522, 753
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	770
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	1 cut(s)	943
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 754, 786
FaqI	GGGAC	1 cut(s)	887
FatI	CATG	1 cut(s)	939
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	3 cut(s)	240, 934, 937
FokI	GGATG	3 cut(s)	156, 305, 956
Fsp4HI	GCNGC	3 cut(s)	240, 934, 937
FspBI	CTAG	2 cut(s)	218, 615
GluI	GCNGC	3 cut(s)	240, 934, 937
GsaI	CCCAGC	1 cut(s)	246
HapII	CCGG	1 cut(s)	485
Hin1II	CATG	1 cut(s)	943
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	3 cut(s)	186, 558, 643
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	3 cut(s)	67, 553, 1001
Hpy166II	GTNNAC	1 cut(s)	698
Hpy188I	TCNGA	5 cut(s)	65, 174, 204, 434, 929
Hpy188III	TCNNGA	5 cut(s)	148, 259, 327, 668, 904
Hpy8I	GTNNAC	1 cut(s)	698
HpyAV	CCTTC	2 cut(s)	209, 800
HpyCH4III	ACNGT	2 cut(s)	341, 475
HpyCH4IV	ACGT	2 cut(s)	132, 900
HpyCH4V	TGCA	6 cut(s)	270, 352, 454, 539, 655, 825
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 460, 494
HpyF3I	CTNAG	4 cut(s)	391, 459, 647, 661
HpySE526I	ACGT	2 cut(s)	132, 900
Hsp92II	CATG	1 cut(s)	943
Kzo9I	GATC	2 cut(s)	158, 601
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	2 cut(s)	945, 948
LweI	GCATC	2 cut(s)	178, 928
MaeI	CTAG	2 cut(s)	218, 615
MaeII	ACGT	2 cut(s)	132, 900
MaeIII	GTNAC	2 cut(s)	335, 559
MalI	GATC	2 cut(s)	160, 603
MboI	GATC	2 cut(s)	158, 601
MboII	GAAGA	6 cut(s)	247, 301, 611, 746, 869, 983
MfeI	CAATTG	2 cut(s)	633, 687
MflI	RGATCY	1 cut(s)	601
MluCI	AATT	4 cut(s)	40, 633, 687, 1015
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	6 cut(s)	104, 187, 283, 289, 803, 874
MroXI	GAANNNNTTC	2 cut(s)	132, 861
MseI	TTAA	3 cut(s)	21, 372, 896
MslI	CAYNNNNRTG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	485
MunI	CAATTG	2 cut(s)	633, 687
Mva1269I	GAATGC	2 cut(s)	454, 913
MvnI	CGCG	2 cut(s)	239, 412
MwoI	GCNNNNNNNGC	3 cut(s)	276, 460, 494
NdeII	GATC	2 cut(s)	158, 601
NlaIII	CATG	1 cut(s)	943
NmuCI	GTSAC	1 cut(s)	559
PctI	GAATGC	2 cut(s)	454, 913
PdmI	GAANNNNTTC	2 cut(s)	132, 861
PfeI	GAWTC	2 cut(s)	186, 643
PkrI	GCNGC	3 cut(s)	241, 935, 938
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
PpuMI	RGGWCCY	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	196
PspPPI	RGGWCCY	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	3 cut(s)	236, 403, 659
RsaNI	GTAC	3 cut(s)	235, 402, 658
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	21, 372, 896
SatI	GCNGC	3 cut(s)	240, 934, 937
Sau3AI	GATC	2 cut(s)	158, 601
Sau96I	GGNCC	1 cut(s)	196
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	1 cut(s)	567
SfaNI	GCATC	2 cut(s)	178, 928
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	164, 371
SmoI	CTYRAG	2 cut(s)	164, 371
Sse9I	AATT	4 cut(s)	40, 633, 687, 1015
SsiI	CCGC	3 cut(s)	239, 410, 640
SspMI	CTAG	2 cut(s)	218, 615
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	2 cut(s)	341, 475
TaiI	ACGT	2 cut(s)	135, 903
TaqI	TCGA	1 cut(s)	184
TasI	AATT	4 cut(s)	40, 633, 687, 1015
TatI	WGTACW	2 cut(s)	401, 657
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	186, 643
Tru1I	TTAA	3 cut(s)	21, 372, 896
Tru9I	TTAA	3 cut(s)	21, 372, 896
TscAI	CASTG	1 cut(s)	827
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	2 cut(s)	933, 936
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	2 cut(s)	91, 141
TspGWI	ACGGA	1 cut(s)	831
TspRI	CASTG	1 cut(s)	827
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	697
XmnI	GAANNNNTTC	2 cut(s)	132, 861
XspI	CTAG	2 cut(s)	218, 615
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.