RLG00000000885
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
7425531 .. 7428068
2538 bp
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UTR
Exon/CDS
Intron
RLM00000000885

Sequence Viewer

Length: 783 bp
ATGGAGAGGTATGAGATTGTGAAAGATATTGGGTCTGGGAATTTTGGGGTGGCAAGGTTGGTCAGAGATAAGTGGACCAGAGAACTCTTTGCTGTTAAGTTCATTGAGAGAGGCCAGAAGCAAATATGTCATAGAGACCTTAAGCTTGAAAATACACTCTTAGATGGCAGCACAGCACCTCGTGTCAAAATATGTGATTTTGGTTACTCAAAGTCACTACTGCAGTCTCAGCCAAAATCAACTGTAGGAACACCAGCCTATATTGCTCCTGAGGTCCTATCTAAAAAGCAATATGATGGAAAAATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATATGTGATGCTAGTTGGAGCTTATCCTTTTGAAGATCCTGATGACCCTAACAACTTCAGAAAATCAATTAATCGGATCCTTGGCGTACAGTACTCAATTCCAGATCATGTTCAAGTTTCCATTGAATGTAGACATCTTTTATCTCAGATATTTGTGGAAAAACCCGAAAAGAGAATAACAATCGCAGGAATTAAAAACCACCCGTGGTTCATAAAGAACTTACCCATGGAACTGATGGAAGGAGGAAGTTGGCAGAGCAATGATGTAAATATTCCATCTCAAAGCACTGAAGAAGTTCTGTCCATAATTCAAGAGGCAAGAAAATCAGTACAGTCCCCAAACGCAGTTACGCATCTCATCGATGGCAGCATGGATCTTGATGATTTGGATGCTGAAGTTGAAGACATTGAAACAAGTGGTGATTTTGTATGTCACGTGAGTAGTTAA

Protein Analysis

261

Amino Acids

29.26

Weight (kDa)

5.32

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 39 - 177 2.1e-15 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 40 - 182 5.1e-38 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000609)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 466
AclWI GGATC 4 cut(s) 365, 406, 419, 717
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 3 cut(s) 376, 645, 750
AcvI CACGTG 1 cut(s) 772
AdeI CACNNNGTG 1 cut(s) 182
AfaI GTAC 3 cut(s) 423, 428, 666
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 7 cut(s) 149, 368, 449, 461, 647, 737, 746
AluBI AGCT 2 cut(s) 145, 356
AluI AGCT 2 cut(s) 145, 356
Alw26I GTCTC 2 cut(s) 129, 231
AlwI GGATC 4 cut(s) 365, 406, 419, 717
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 168, 702
ApoI RAATTY 1 cut(s) 40
AseI ATTAAT 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 630
AspS9I GGNCC 2 cut(s) 75, 274
AsuHPI GGTGA 2 cut(s) 322, 767
AvaII GGWCC 2 cut(s) 75, 274
AxyI CCTNAGG 1 cut(s) 270
BamHI GGATCC 1 cut(s) 411
BauI CACGAG 1 cut(s) 180
BbrPI CACGTG 1 cut(s) 772
BbsI GAAGAC 1 cut(s) 744
BbvI GCAGC 2 cut(s) 180, 714
BccI CCATC 5 cut(s) 158, 290, 565, 619, 692
BcoDI GTCTC 2 cut(s) 129, 231
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 2 cut(s) 221, 243
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 169, 703
BlsI GCNGC 2 cut(s) 170, 704
BmcAI AGTACT 1 cut(s) 428
Bme18I GGWCC 2 cut(s) 75, 274
BmgT120I GGNCC 2 cut(s) 75, 274
BmiI GGNNCC 1 cut(s) 413
BmsI GCATC 3 cut(s) 333, 697, 715
BpiI GAAGAC 1 cut(s) 744
Bsa29I ATCGAT 1 cut(s) 696
BsaAI YACGTR 1 cut(s) 772
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 415, 539, 561
Bse21I CCTNAGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 601
BseCI ATCGAT 1 cut(s) 696
BseDI CCNNGG 3 cut(s) 415, 539, 561
BseGI GGATG 1 cut(s) 730
BseMI GCAATG 1 cut(s) 601
BseMII CTCAG 3 cut(s) 242, 261, 494
BseXI GCAGC 2 cut(s) 180, 714
BshFI GGCC 1 cut(s) 114
BshVI ATCGAT 1 cut(s) 696
BslFI GGGAC 1 cut(s) 655
BsmAI GTCTC 2 cut(s) 129, 231
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 1 cut(s) 114
Bso31I GGTCTC 1 cut(s) 129
Bsp143I GATC 4 cut(s) 370, 411, 439, 709
Bsp19I CCATGG 1 cut(s) 561
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 3 cut(s) 241, 262, 493
BspDI ATCGAT 1 cut(s) 696
BspLI GGNNCC 1 cut(s) 413
BspMAI CTGCAG 1 cut(s) 225
BspPI GGATC 4 cut(s) 365, 406, 419, 717
BspTI CTTAAG 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 601
BssECI CCNNGG 3 cut(s) 415, 539, 561
BssMI GATC 4 cut(s) 370, 411, 439, 709
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 415, 561
Bst2BI CACGAG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 244, 426, 669
BstAFI CTTAAG 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 772
BstDEI CTNAG 4 cut(s) 160, 228, 270, 480
BstDSI CCRYGG 2 cut(s) 539, 561
BstF5I GGATG 1 cut(s) 730
BstKTI GATC 4 cut(s) 373, 414, 442, 712
BstMAI GTCTC 2 cut(s) 129, 231
BstMBI GATC 4 cut(s) 370, 411, 439, 709
BstMWI GCNNNNNNNGC 2 cut(s) 229, 263
BstSFI CTRYAG 2 cut(s) 221, 243
BstV1I GCAGC 2 cut(s) 180, 714
BstV2I GAAGAC 1 cut(s) 744
BstX2I RGATCY 3 cut(s) 370, 411, 709
BstYI RGATCY 3 cut(s) 370, 411, 709
Bsu15I ATCGAT 1 cut(s) 696
Bsu36I CCTNAGG 1 cut(s) 270
BsuRI GGCC 1 cut(s) 114
BsuTUI ATCGAT 1 cut(s) 696
BtgI CCRYGG 2 cut(s) 539, 561
BtsCI GGATG 1 cut(s) 730
BtsIMutI CAGTG 1 cut(s) 621
Cfr13I GGNCC 2 cut(s) 75, 274
ClaI ATCGAT 1 cut(s) 696
Csp6I GTAC 3 cut(s) 422, 427, 665
CviAII CATG 3 cut(s) 443, 562, 706
CviJI RGCY 5 cut(s) 114, 145, 232, 257, 356
CviKI_1 RGCY 5 cut(s) 114, 145, 232, 257, 356
CviQI GTAC 3 cut(s) 422, 427, 665
DdeI CTNAG 4 cut(s) 160, 228, 270, 480
DpnI GATC 4 cut(s) 372, 413, 441, 711
DpnII GATC 4 cut(s) 370, 411, 439, 709
DraIII CACNNNGTG 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 415, 561
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 75, 274
Eco57I CTGAAG 3 cut(s) 376, 645, 750
Eco72I CACGTG 1 cut(s) 772
Eco81I CCTNAGG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 415, 561
ErhI CCWWGG 2 cut(s) 415, 561
FaeI CATG 3 cut(s) 446, 565, 709
FaqI GGGAC 1 cut(s) 655
FatI CATG 3 cut(s) 442, 561, 705
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 2 cut(s) 169, 703
FokI GGATG 1 cut(s) 737
Fsp4HI GCNGC 2 cut(s) 169, 703
FspBI CTAG 1 cut(s) 347
GluI GCNGC 2 cut(s) 169, 703
HaeIII GGCC 1 cut(s) 114
Hin1II CATG 3 cut(s) 446, 565, 709
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 327
HphI GGTGA 2 cut(s) 322, 767
Hpy166II GTNNAC 2 cut(s) 75, 467
Hpy188I TCNGA 4 cut(s) 65, 395, 411, 483
Hpy188III TCNNGA 5 cut(s) 269, 374, 437, 647, 713
Hpy8I GTNNAC 2 cut(s) 75, 467
HpyAV CCTTC 1 cut(s) 569
HpyCH4III ACNGT 3 cut(s) 244, 426, 669
HpyCH4IV ACGT 1 cut(s) 771
HpyCH4V TGCA 2 cut(s) 223, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 263
HpyF3I CTNAG 4 cut(s) 160, 228, 270, 480
HpySE526I ACGT 1 cut(s) 771
Hsp92II CATG 3 cut(s) 446, 565, 709
Kzo9I GATC 4 cut(s) 370, 411, 439, 709
LmnI GCTCC 2 cut(s) 271, 353
LpnPI CCDG 8 cut(s) 21, 91, 128, 267, 282, 387, 450, 507
Lsp1109I GCAGC 2 cut(s) 180, 714
LweI GCATC 3 cut(s) 333, 697, 715
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 771
MaeIII GTNAC 5 cut(s) 203, 213, 328, 682, 767
MalI GATC 4 cut(s) 372, 413, 441, 711
MboI GATC 4 cut(s) 370, 411, 439, 709
MboII GAAGA 3 cut(s) 380, 638, 749
MflI RGATCY 3 cut(s) 370, 411, 709
MluCI AATT 6 cut(s) 40, 303, 402, 432, 525, 642
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 5 cut(s) 104, 189, 265, 572, 643
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 5 cut(s) 96, 141, 405, 528, 781
MspCI CTTAAG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 229, 263
NcoI CCATGG 1 cut(s) 561
NdeII GATC 4 cut(s) 370, 411, 439, 709
NlaIII CATG 3 cut(s) 446, 565, 709
NlaIV GGNNCC 1 cut(s) 413
NmuCI GTSAC 3 cut(s) 213, 328, 767
PdmI GAANNNNTTC 1 cut(s) 630
PkrI GCNGC 2 cut(s) 170, 704
PleI GAGTC 1 cut(s) 335
PmaCI CACGTG 1 cut(s) 772
PmlI CACGTG 1 cut(s) 772
PpsI GAGTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 772
PpuMI RGGWCCY 1 cut(s) 274
PshBI ATTAAT 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 274
PspCI CACGTG 1 cut(s) 772
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 2 cut(s) 75, 274
PspPPI RGGWCCY 1 cut(s) 274
PstI CTGCAG 1 cut(s) 225
PsuI RGATCY 3 cut(s) 370, 411, 709
RsaI GTAC 3 cut(s) 423, 428, 666
RsaNI GTAC 3 cut(s) 422, 427, 665
SaqAI TTAA 5 cut(s) 96, 141, 405, 528, 781
SatI GCNGC 2 cut(s) 169, 703
Sau3AI GATC 4 cut(s) 370, 411, 439, 709
Sau96I GGNCC 2 cut(s) 75, 274
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 1 cut(s) 336
SetI ASST 9 cut(s) 11, 59, 141, 147, 181, 276, 335, 358, 774
SfaNI GCATC 3 cut(s) 333, 697, 715
SfcI CTRYAG 2 cut(s) 221, 243
SinI GGWCC 2 cut(s) 75, 274
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 6 cut(s) 40, 303, 402, 432, 525, 642
SspI AATATT 1 cut(s) 607
SspMI CTAG 1 cut(s) 347
StyI CCWWGG 2 cut(s) 415, 561
TaaI ACNGT 3 cut(s) 244, 426, 669
TaiI ACGT 1 cut(s) 774
TaqI TCGA 1 cut(s) 696
TasI AATT 6 cut(s) 40, 303, 402, 432, 525, 642
TatI WGTACW 2 cut(s) 426, 664
Tru1I TTAA 5 cut(s) 96, 141, 405, 528, 781
Tru9I TTAA 5 cut(s) 96, 141, 405, 528, 781
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 3 cut(s) 213, 328, 767
TseI GCWGC 2 cut(s) 168, 702
Tsp45I GTSAC 3 cut(s) 213, 328, 767
TspDTI ATGAA 2 cut(s) 91, 535
TspRI CASTG 1 cut(s) 628
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 75, 274
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 466
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 1 cut(s) 347
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.