Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

60274806 .. 60277626

Gene Structure 2821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGAGGTATGAGATTGTGAAAGATATTGGGTCTGGGAATTTTGGGGTGGCAAGGTTGGTCAGAGATAAGTGGACCAGAGAACTCTTTGCTGTTAAGTTCATTGAGAGAGGCCAGAAGATAGATGAACATGTACAAAGGGAAATCATGAACCACAGATCGTTGAAGCATCCCAATATTGTTCAATTCAAAGAGGTTCTTCTGACACCAACTCATCTAGCCATAGTAATGGAGTATGCTGCTGGAGGAGAACTCTTTGGGAGAATATGCAATGCTGGTAGATTTAGTGAGAATGAGGCAAGGTTTTTCTTCCAGCAATTGATATCTGGAGTCAGTTACTGTCATTCAATGCAAATATGTCACAGAGACCTTAAGCTTGAAAATACACTCTTAGATGGCAGCACAGCACCTCATGTCAAAATATGTGATTTTGGATACTCAAAGTCACTACTGCAGTCTCAGCCAAAATCAACTGTAGGAACACCAGCCTATATTGCTCCTGAGGTCCTATCTAAAAAGCAATATGATGGAAAAATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATATGTGATGCTAGTTGGAGCTTATCCTTTTGAAGATCCTGATGATCCTAACAACTTCAGAAAAACAATTGATCGGATCCTTGGCGTACAGTACTCAATTCCAGATCATGTTCAAGTTTCCATTGAATGTAAACATCTTTTATCTCAGATATTTGTGGAAAAACCCGAAAAGAGAATAACAATCGCAGGAATTAAAAACCACCCTTGGTTCTTAAAGAACTTACCCATGGAACTGATGGAAGGAGGAAGTTGGCAGAGCAATGATGTAAATATTCCATCTCAAAGCACTGAAGAAGTTATGTCCATAATTCAAGAGGCAAGAAAATCAGTACAGTCCCCAAACGCAGTTACGCATCTCATCGAAGGCAGCATGGATCTTGATGATTTGGATGCTGAAGTTGAAGACATTGAAACAAGTGGTGATTTTGTATGTCACGTGAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

337

Amino Acids

38.1

Weight (kDa)

5.57

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 259	9.4e-74	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 254	3.3e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	596, 605, 637, 650, 948
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	3 cut(s)	607, 876, 981
AcvI	CACGTG	1 cut(s)	1003
AfaI	GTAC	4 cut(s)	135, 654, 659, 897
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	130
AluBI	AGCT	2 cut(s)	376, 587
AluI	AGCT	2 cut(s)	376, 587
Alw26I	GTCTC	2 cut(s)	360, 462
AlwI	GGATC	5 cut(s)	596, 605, 637, 650, 948
AlwNI	CAGNNNCTG	1 cut(s)	339
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	239, 399, 933
ApoI	RAATTY	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	75, 505
AsuHPI	GGTGA	2 cut(s)	553, 998
AvaII	GGWCC	2 cut(s)	75, 505
AxyI	CCTNAGG	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	642
BbrPI	CACGTG	1 cut(s)	1003
BbsI	GAAGAC	1 cut(s)	975
BbvI	GCAGC	3 cut(s)	226, 411, 945
BccI	CCATC	4 cut(s)	389, 521, 796, 850
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	360, 462
BfaI	CTAG	2 cut(s)	218, 578
BfmI	CTRYAG	2 cut(s)	452, 474
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	3 cut(s)	240, 400, 934
BlsI	GCNGC	3 cut(s)	241, 401, 935
BmcAI	AGTACT	1 cut(s)	659
Bme18I	GGWCC	2 cut(s)	75, 505
BmgT120I	GGNCC	2 cut(s)	75, 505
BmiI	GGNNCC	1 cut(s)	644
BmsI	GCATC	4 cut(s)	178, 564, 928, 946
BpiI	GAAGAC	1 cut(s)	975
BplI	GAGNNNNNCTC	2 cut(s)	237, 269
BpmI	CTGGAG	2 cut(s)	264, 348
BsaAI	YACGTR	1 cut(s)	1003
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	646, 770, 792
Bse21I	CCTNAGG	1 cut(s)	501
Bse3DI	GCAATG	2 cut(s)	277, 832
BseDI	CCNNGG	3 cut(s)	646, 770, 792
BseGI	GGATG	2 cut(s)	169, 961
BseMI	GCAATG	2 cut(s)	277, 832
BseMII	CTCAG	3 cut(s)	473, 492, 725
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	226, 411, 945
BshFI	GGCC	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	886
BsmAI	GTCTC	2 cut(s)	360, 462
BsmFI	GGGAC	1 cut(s)	886
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	360
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	7 cut(s)	158, 601, 610, 637, 642, 670, 940
Bsp19I	CCATGG	1 cut(s)	792
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	3 cut(s)	472, 493, 724
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	644
BspMAI	CTGCAG	1 cut(s)	456
BspPI	GGATC	5 cut(s)	596, 605, 637, 650, 948
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	277, 832
BsrGI	TGTACA	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	646, 770, 792
BssMI	GATC	7 cut(s)	158, 601, 610, 637, 642, 670, 940
BssT1I	CCWWGG	3 cut(s)	646, 770, 792
Bst4CI	ACNGT	4 cut(s)	341, 475, 657, 900
BstAFI	CTTAAG	1 cut(s)	371
BstAUI	TGTACA	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	1003
BstDEI	CTNAG	4 cut(s)	391, 459, 501, 711
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	2 cut(s)	169, 961
BstKTI	GATC	7 cut(s)	161, 604, 613, 640, 645, 673, 943
BstMAI	GTCTC	2 cut(s)	360, 462
BstMBI	GATC	7 cut(s)	158, 601, 610, 637, 642, 670, 940
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 494
BstNSI	RCATGY	1 cut(s)	134
BstSFI	CTRYAG	2 cut(s)	452, 474
BstV1I	GCAGC	3 cut(s)	226, 411, 945
BstV2I	GAAGAC	1 cut(s)	975
BstX2I	RGATCY	3 cut(s)	601, 642, 940
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	3 cut(s)	601, 642, 940
Bsu36I	CCTNAGG	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	792
BtsCI	GGATG	2 cut(s)	169, 961
BtsIMutI	CAGTG	1 cut(s)	852
CaiI	CAGNNNCTG	1 cut(s)	339
CciI	TCATGA	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	75, 505
Csp6I	GTAC	4 cut(s)	134, 653, 658, 896
CviAII	CATG	6 cut(s)	131, 148, 413, 674, 793, 937
CviJI	RGCY	6 cut(s)	114, 221, 376, 463, 488, 587
CviKI_1	RGCY	6 cut(s)	114, 221, 376, 463, 488, 587
CviQI	GTAC	4 cut(s)	134, 653, 658, 896
DdeI	CTNAG	4 cut(s)	391, 459, 501, 711
DpnI	GATC	7 cut(s)	160, 603, 612, 639, 644, 672, 942
DpnII	GATC	7 cut(s)	158, 601, 610, 637, 642, 670, 940
Eco130I	CCWWGG	3 cut(s)	646, 770, 792
Eco31I	GGTCTC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	75, 505
Eco57I	CTGAAG	3 cut(s)	607, 876, 981
Eco72I	CACGTG	1 cut(s)	1003
Eco81I	CCTNAGG	1 cut(s)	501
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	3 cut(s)	646, 770, 792
ErhI	CCWWGG	3 cut(s)	646, 770, 792
FaeI	CATG	6 cut(s)	134, 151, 416, 677, 796, 940
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	1 cut(s)	886
FatI	CATG	6 cut(s)	130, 147, 412, 673, 792, 936
Fnu4HI	GCNGC	3 cut(s)	240, 400, 934
FokI	GGATG	2 cut(s)	156, 968
Fsp4HI	GCNGC	3 cut(s)	240, 400, 934
FspBI	CTAG	2 cut(s)	218, 578
GluI	GCNGC	3 cut(s)	240, 400, 934
GsuI	CTGGAG	2 cut(s)	264, 348
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	134, 151, 416, 677, 796, 940
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	330, 558
HphI	GGTGA	2 cut(s)	553, 998
Hpy166II	GTNNAC	2 cut(s)	75, 698
Hpy188I	TCNGA	5 cut(s)	65, 204, 626, 642, 714
Hpy188III	TCNNGA	7 cut(s)	148, 327, 500, 605, 668, 878, 944
Hpy8I	GTNNAC	2 cut(s)	75, 698
HpyAV	CCTTC	2 cut(s)	800, 923
HpyCH4III	ACNGT	4 cut(s)	341, 475, 657, 900
HpyCH4IV	ACGT	1 cut(s)	1002
HpyCH4V	TGCA	4 cut(s)	270, 352, 454, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 494
HpyF3I	CTNAG	4 cut(s)	391, 459, 501, 711
HpySE526I	ACGT	1 cut(s)	1002
Hsp92II	CATG	6 cut(s)	134, 151, 416, 677, 796, 940
Kzo9I	GATC	7 cut(s)	158, 601, 610, 637, 642, 670, 940
LmnI	GCTCC	2 cut(s)	502, 584
Lsp1109I	GCAGC	3 cut(s)	226, 411, 945
LweI	GCATC	4 cut(s)	178, 564, 928, 946
MaeI	CTAG	2 cut(s)	218, 578
MaeII	ACGT	1 cut(s)	1002
MaeIII	GTNAC	6 cut(s)	335, 359, 444, 559, 913, 998
MalI	GATC	7 cut(s)	160, 603, 612, 639, 644, 672, 942
MboI	GATC	7 cut(s)	158, 601, 610, 637, 642, 670, 940
MboII	GAAGA	6 cut(s)	130, 191, 301, 611, 869, 980
MfeI	CAATTG	2 cut(s)	317, 633
MflI	RGATCY	3 cut(s)	601, 642, 940
MluCI	AATT	8 cut(s)	40, 185, 317, 534, 633, 663, 756, 873
MlyI	GAGTC	2 cut(s)	339, 567
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	8 cut(s)	104, 187, 239, 289, 420, 496, 803, 874
MseI	TTAA	5 cut(s)	96, 372, 759, 779, 1012
MslI	CAYNNNNRTG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	371
MunI	CAATTG	2 cut(s)	317, 633
MwoI	GCNNNNNNNGC	2 cut(s)	460, 494
NcoI	CCATGG	1 cut(s)	792
NdeII	GATC	7 cut(s)	158, 601, 610, 637, 642, 670, 940
NlaIII	CATG	6 cut(s)	134, 151, 416, 677, 796, 940
NlaIV	GGNNCC	1 cut(s)	644
NmuCI	GTSAC	4 cut(s)	359, 444, 559, 998
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	1 cut(s)	147
PciI	ACATGT	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	241, 401, 935
PleI	GAGTC	2 cut(s)	338, 566
PmaCI	CACGTG	1 cut(s)	1003
PmlI	CACGTG	1 cut(s)	1003
PpsI	GAGTC	2 cut(s)	338, 566
Ppu21I	YACGTR	1 cut(s)	1003
PpuMI	RGGWCCY	1 cut(s)	505
PscI	ACATGT	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	505
PspCI	CACGTG	1 cut(s)	1003
PspN4I	GGNNCC	1 cut(s)	644
PspPI	GGNCC	2 cut(s)	75, 505
PspPPI	RGGWCCY	1 cut(s)	505
PstI	CTGCAG	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	339
PsuI	RGATCY	3 cut(s)	601, 642, 940
RsaI	GTAC	4 cut(s)	135, 654, 659, 897
RsaNI	GTAC	4 cut(s)	134, 653, 658, 896
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	5 cut(s)	96, 372, 759, 779, 1012
SatI	GCNGC	3 cut(s)	240, 400, 934
Sau3AI	GATC	7 cut(s)	158, 601, 610, 637, 642, 670, 940
Sau96I	GGNCC	2 cut(s)	75, 505
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	2 cut(s)	339, 567
SfaNI	GCATC	4 cut(s)	178, 564, 928, 946
SfcI	CTRYAG	2 cut(s)	452, 474
SinI	GGWCC	2 cut(s)	75, 505
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	8 cut(s)	40, 185, 317, 534, 633, 663, 756, 873
SspI	AATATT	2 cut(s)	178, 838
SspMI	CTAG	2 cut(s)	218, 578
StyI	CCWWGG	3 cut(s)	646, 770, 792
TaaI	ACNGT	4 cut(s)	341, 475, 657, 900
TaiI	ACGT	1 cut(s)	1005
TaqI	TCGA	1 cut(s)	927
TasI	AATT	8 cut(s)	40, 185, 317, 534, 633, 663, 756, 873
TatI	WGTACW	3 cut(s)	133, 657, 895
Tru1I	TTAA	5 cut(s)	96, 372, 759, 779, 1012
Tru9I	TTAA	5 cut(s)	96, 372, 759, 779, 1012
TscAI	CASTG	1 cut(s)	859
TseFI	GTSAC	4 cut(s)	359, 444, 559, 998
TseI	GCWGC	3 cut(s)	239, 399, 933
Tsp45I	GTSAC	4 cut(s)	359, 444, 559, 998
TspDTI	ATGAA	3 cut(s)	91, 141, 164
TspRI	CASTG	1 cut(s)	859
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	75, 505
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	799
XspI	CTAG	2 cut(s)	218, 578
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.