Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

2143488 .. 2144521

Gene Structure 1034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGTTCTCTTTGATCGCAGATACAGTCACAGTTTGCACGGCTAAGCAAGGTATCGCGTTTGGGAAATCTCTTCTTCAAAGGTTGGATTTGGCCAATCACATTTCTTTCGCCGATTCCGTTGTTGATCATCAATCTCCCGGTGGAGGAATCGTTCAAGCATCGGCGATTATTTTCCCCGTCGATGCAATTGCTCCTCCACCGGTCAGATCTAGCTCTTATAAGACAATTCGCCGGATCCGTAAAAAGCGACGAACCAGGCGAGTTTCGTTTGGTGGAGATGGAGATGACGCAGGAGATTTTGGTCGTTTTCTGTTAGAAGGTGATTTCGGTGGTAGCGACGGTCCATTTGGATTTGGAGGCGGAGGAAACGATGGAGGCGGAAAGGGATGGAACTACGGCGGCGGCGGCGGTGGTTTCGGGAGGGATAATTGGGATGGGTCTTCGTTTTCGTCTTGGTCAGATCCAGCGATGGAATTTGTGTATGAAGTGATTTGCTGGATCGCGTTGTCTAATTGTGTGCACTTTGCGTTCAAGAGGATAGTGAGGATCGTGACCGACGGTGAAAGGGAGAAGTTGAACATTGCATTATCTCCGGTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

21.45

Weight (kDa)

6.82

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AccII	CGCG	2 cut(s)	59, 506
AciI	CCGC	6 cut(s)	363, 381, 402, 405, 408, 411
AclWI	GGATC	5 cut(s)	232, 245, 458, 509, 557
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	4 cut(s)	80, 158, 535, 580
AjnI	CCWGG	1 cut(s)	257
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw21I	GWGCWC	1 cut(s)	525
Alw44I	GTGCAC	1 cut(s)	521
AlwI	GGATC	5 cut(s)	232, 245, 458, 509, 557
AoxI	GGCC	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	521
ApoI	RAATTY	1 cut(s)	476
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AsiGI	ACCGGT	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	335, 575
AvaII	GGWCC	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	525
BalI	TGGCCA	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	525
BccI	CCATC	5 cut(s)	275, 368, 384, 431, 466
BceAI	ACGGC	2 cut(s)	57, 415
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	259
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	141
BfaI	CTAG	1 cut(s)	213
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	3 cut(s)	403, 406, 409
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	3 cut(s)	404, 407, 410
Bme1390I	CCNGG	2 cut(s)	141, 259
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	2 cut(s)	141, 259
BmsI	GCATC	2 cut(s)	170, 175
BpiI	GAAGAC	1 cut(s)	435
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	141
BsaWI	WCCGGW	2 cut(s)	202, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	395, 442
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	582
BseRI	GAGGAG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	525
Bsh1236I	CGCG	2 cut(s)	59, 506
BshFI	GGCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	525
BsiSI	CCGG	4 cut(s)	141, 203, 235, 596
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	7 cut(s)	15, 127, 209, 237, 463, 501, 549
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	6 cut(s)	363, 381, 402, 405, 408, 411
BspANI	GGCC	1 cut(s)	95
BspFNI	CGCG	2 cut(s)	59, 506
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	5 cut(s)	232, 245, 458, 509, 557
BsrDI	GCAATG	1 cut(s)	582
BsrFI	RCCGGY	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	202
BssMI	GATC	7 cut(s)	15, 127, 209, 237, 463, 501, 549
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	4 cut(s)	28, 34, 344, 563
Bst6I	CTCTTC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	395, 442
BstFNI	CGCG	2 cut(s)	59, 506
BstKTI	GATC	7 cut(s)	18, 130, 212, 240, 466, 504, 552
BstMBI	GATC	7 cut(s)	15, 127, 209, 237, 463, 501, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	408
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	139, 257
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	2 cut(s)	59, 506
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	3 cut(s)	209, 237, 463
BstYI	RGATCY	3 cut(s)	209, 237, 463
BsuRI	GGCC	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	485
BtsCI	GGATG	2 cut(s)	395, 442
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	1 cut(s)	299
CspAI	ACCGGT	1 cut(s)	202
CviJI	RGCY	3 cut(s)	44, 95, 216
CviKI_1	RGCY	3 cut(s)	44, 95, 216
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	7 cut(s)	17, 129, 211, 239, 465, 503, 551
DpnII	GATC	7 cut(s)	15, 127, 209, 237, 463, 501, 549
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	2 cut(s)	378, 396
Eco47I	GGWCC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	257
FaiI	YATR	3 cut(s)	222, 486, 601
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	403, 406, 409
FokI	GGATG	2 cut(s)	402, 449
Fsp4HI	GCNGC	3 cut(s)	403, 406, 409
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	3 cut(s)	403, 406, 409
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	4 cut(s)	141, 203, 235, 596
HgaI	GACGC	1 cut(s)	299
HinfI	GANTC	2 cut(s)	116, 150
HpaII	CCGG	4 cut(s)	141, 203, 235, 596
HphI	GGTGA	2 cut(s)	335, 575
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	2 cut(s)	209, 463
Hpy188III	TCNNGA	3 cut(s)	421, 535, 553
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	4 cut(s)	185, 255, 344, 563
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	4 cut(s)	28, 34, 344, 563
HpyCH4V	TGCA	4 cut(s)	39, 188, 523, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	408
HpyF3I	CTNAG	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	7 cut(s)	15, 127, 209, 237, 463, 501, 549
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	8 cut(s)	154, 216, 244, 248, 271, 279, 480, 484
LweI	GCATC	2 cut(s)	170, 175
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	28, 553
MalI	GATC	7 cut(s)	17, 129, 211, 239, 465, 503, 551
MboI	GATC	7 cut(s)	15, 127, 209, 237, 463, 501, 549
MboII	GAAGA	3 cut(s)	65, 68, 435
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	3 cut(s)	209, 237, 463
MhlI	GDGCHC	1 cut(s)	525
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	5 cut(s)	189, 228, 430, 476, 514
MluNI	TGGCCA	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	8 cut(s)	140, 207, 353, 359, 371, 417, 531, 540
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	4 cut(s)	141, 203, 235, 596
MspR9I	CCNGG	2 cut(s)	141, 259
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	259
MvnI	CGCG	2 cut(s)	59, 506
MwoI	GCNNNNNNNGC	1 cut(s)	408
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	7 cut(s)	15, 127, 209, 237, 463, 501, 549
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	2 cut(s)	28, 553
PcsI	WCGNNNNNNNCGW	4 cut(s)	117, 238, 259, 336
PfeI	GAWTC	2 cut(s)	116, 150
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	404, 407, 410
PsiI	TTATAA	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	344
PsuI	RGATCY	3 cut(s)	209, 237, 463
SatI	GCNGC	3 cut(s)	403, 406, 409
Sau3AI	GATC	7 cut(s)	15, 127, 209, 237, 463, 501, 549
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	141, 259
SduI	GDGCHC	1 cut(s)	525
SetI	ASST	4 cut(s)	55, 86, 218, 325
SfaNI	GCATC	2 cut(s)	170, 175
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	5 cut(s)	189, 228, 430, 476, 514
SsiI	CCGC	6 cut(s)	363, 381, 402, 405, 408, 411
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	139, 257
TaaI	ACNGT	4 cut(s)	28, 34, 344, 563
TaqI	TCGA	1 cut(s)	183
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	5 cut(s)	189, 228, 430, 476, 514
TauI	GCSGC	3 cut(s)	405, 408, 411
TfiI	GAWTC	2 cut(s)	116, 150
TseFI	GTSAC	2 cut(s)	28, 553
Tsp45I	GTSAC	2 cut(s)	28, 553
TspDTI	ATGAA	1 cut(s)	501
TspGWI	ACGGA	2 cut(s)	109, 230
VneI	GTGCAC	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	476
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.