Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Reverse (-)

87935464 .. 87935724

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG571900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAAGAACCTCAAGCTTCCGATCATTGAGTCCGGCGGCCAGGAGCTCAAAATTGAATCCGAGTCGTTCTCCTCGATCCGTACTGTAATATTTCGTAGTCTCAATGTCTGGAAGGCGTATGAATCGGAGAACCGCAGTGACAACGGCGAGCGGCTGAGATCTGAAGCATCCGATACTTTCGAACCAGCTCCGCCACGCGACTTCCAGCCTCGGCATCGCTGTTGTGGCCTTCGTGTCTACAAGATCTGGTCAGCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

86

Amino Acids

9.96

Weight (kDa)

8.71

Isoelectric Point (pI)

64.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	151
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	198
AciI	CCGC	5 cut(s)	36, 133, 151, 191, 254
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	3 cut(s)	16, 46, 188
AluI	AGCT	3 cut(s)	16, 46, 188
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	2 cut(s)	37, 226
AsuII	TTCGAA	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	104
BglII	AGATCT	2 cut(s)	158, 243
BisI	GCNGC	2 cut(s)	37, 152
BlsI	GCNGC	2 cut(s)	38, 153
Bme1390I	CCNGG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	176, 223
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
Bpu14I	TTCGAA	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	39, 228
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	39, 228
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	21, 75, 158, 243
BspACI	CCGC	5 cut(s)	36, 133, 151, 191, 254
BspANI	GGCC	2 cut(s)	39, 228
BspCNI	CTCAG	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	198
BspPI	GGATC	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	4 cut(s)	21, 75, 158, 243
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	85
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	167
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	4 cut(s)	24, 78, 161, 246
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	4 cut(s)	21, 75, 158, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	158, 243
BstYI	RGATCY	2 cut(s)	158, 243
BsuRI	GGCC	2 cut(s)	39, 228
BtgZI	GCGATG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	81
CviJI	RGCY	7 cut(s)	16, 39, 46, 154, 188, 208, 228
CviKI_1	RGCY	7 cut(s)	16, 39, 46, 154, 188, 208, 228
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	4 cut(s)	23, 77, 160, 245
DpnII	GATC	4 cut(s)	21, 75, 158, 243
EaeI	YGGCCR	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	48
FaiI	YATR	2 cut(s)	120, 259
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	37, 152
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	37, 152
GluI	GCNGC	2 cut(s)	37, 152
HaeIII	GGCC	2 cut(s)	39, 228
HapII	CCGG	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	4 cut(s)	29, 56, 62, 122
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	5 cut(s)	21, 61, 127, 163, 172
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	106, 239
HpyCH4III	ACNGT	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	155
Kzo9I	GATC	4 cut(s)	21, 75, 158, 243
LmnI	GCTCC	2 cut(s)	43, 193
LpnPI	CCDG	7 cut(s)	26, 46, 53, 94, 198, 218, 232
LweI	GCATC	2 cut(s)	176, 223
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	4 cut(s)	23, 77, 160, 245
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	4 cut(s)	21, 75, 158, 243
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	2 cut(s)	158, 243
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	51
MlyI	GAGTC	2 cut(s)	38, 71
MnlI	CCTC	3 cut(s)	20, 82, 219
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	4 cut(s)	21, 75, 158, 243
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	137
NspV	TTCGAA	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	56, 122
PkrI	GCNGC	2 cut(s)	38, 153
PleI	GAGTC	2 cut(s)	37, 70
PpsI	GAGTC	2 cut(s)	37, 70
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PsuI	RGATCY	2 cut(s)	158, 243
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	48
SatI	GCNGC	2 cut(s)	37, 152
Sau3AI	GATC	4 cut(s)	21, 75, 158, 243
SchI	GAGTC	2 cut(s)	38, 71
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	4 cut(s)	12, 18, 48, 190
SfaNI	GCATC	2 cut(s)	176, 223
SfuI	TTCGAA	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	5 cut(s)	36, 133, 151, 191, 254
SspI	AATATT	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	74, 180
TasI	AATT	1 cut(s)	51
TauI	GCSGC	2 cut(s)	39, 154
TfiI	GAWTC	2 cut(s)	56, 122
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	17, 135
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.