RLG00000007543

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001308
Physical Location & Seq
Forward (+)
17982270 .. 17982881
612 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007543

Sequence Viewer

Length: 612 bp
ATGGACATCTCCCTCCGCTACGACGCCGTTTCAGTAGCCAACACCCCCGCGCAGGGTCTAGGGTTCTCAAATTTCCCGATTCGCAACCATCACCTCACCTCCACCAACCAAATCTACGTCGCCGATTCCCATCCCGACGAATCCCCACCGTCCAACGCCTCCCTCCAGATCTCCGCCTTCATCTTCCCCGTCGACGCTGTCGCTCCGCCGCGCGTGCGTTCCAACTCCTACAAAACCGCCACCCGCACCCTCCTCCGCAAGAAGCGGCGCACCAGGCGGAGATCGTCGAGCGGCGATGACTCCAACGACGACGGCGGCGAGGAGGACGGCGGGTTCTTCGGCGGCGACGGCCCCTTTTTCAACGGCGGATGGGGCGGCGGCGGCGGCGGCGGCGGGGGTTGGAATTTCGATAGATTCGGAGGGCATAGTTGGGATGATTCGTCGTCGTCGCGGTCCGATCCGGCGTTCGATTTCGTCTACGAGGTGATGGGTTGGATTGCGCTTTCGAATTGCGTGCACTTTGCTTTCAAGAGGGTGATTCGAATCGTGGCGAACGGGTTAGGCGATGCGGAGAGAGAGAAGGTGCCTATGAGATTGGCTTCGGTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

21.97

Weight (kDa)

6.51

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 583
AccBSI CCGCTC 1 cut(s) 291
AccI GTMKAC 2 cut(s) 192, 477
AccII CGCG 4 cut(s) 50, 211, 213, 451
AclWI GGATC 1 cut(s) 452
AcsI RAATTY 2 cut(s) 70, 403
AcyI GRCGYC 1 cut(s) 24
AfiI CCNNNNNNNGG 2 cut(s) 52, 53
AgsI TTSAA 2 cut(s) 361, 529
AjnI CCWGG 1 cut(s) 272
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
Alw21I GWGCWC 1 cut(s) 519
Alw44I GTGCAC 1 cut(s) 515
AlwI GGATC 1 cut(s) 452
AoxI GGCC 1 cut(s) 349
ApaLI GTGCAC 1 cut(s) 515
ApoI RAATTY 2 cut(s) 70, 403
AspLEI GCGC 4 cut(s) 52, 213, 270, 502
AspS9I GGNCC 2 cut(s) 350, 453
AsuHPI GGTGA 4 cut(s) 83, 88, 496, 547
AsuII TTCGAA 2 cut(s) 506, 541
AvaII GGWCC 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 519
BanI GGYRCC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 519
BccI CCATC 4 cut(s) 96, 138, 363, 481
BceAI ACGGC 5 cut(s) 11, 328, 343, 364, 379
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciT130I CCWGG 1 cut(s) 274
BfaI CTAG 1 cut(s) 59
BglII AGATCT 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 2 cut(s) 350, 453
BmiI GGNNCC 2 cut(s) 352, 585
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 556
BpmI CTGGAG 1 cut(s) 149
Bpu14I TTCGAA 2 cut(s) 506, 541
BsaBI GATNNNNATC 2 cut(s) 129, 542
BsaHI GRCGYC 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 53
Bse8I GATNNNNATC 2 cut(s) 129, 542
BseBI CCWGG 1 cut(s) 274
BseGI GGATG 3 cut(s) 130, 374, 439
BseJI GATNNNNATC 2 cut(s) 129, 542
BseLI CCNNNNNNNGG 2 cut(s) 52, 53
BseRI GAGGAG 2 cut(s) 242, 335
BseSI GKGCMC 1 cut(s) 519
Bsh1236I CGCG 4 cut(s) 50, 211, 213, 451
BshFI GGCC 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 583
BsiHKAI GWGCWC 1 cut(s) 519
BsiSI CCGG 1 cut(s) 461
BslI CCNNNNNNNGG 2 cut(s) 52, 53
BsnI GGCC 1 cut(s) 351
Bsp119I TTCGAA 2 cut(s) 506, 541
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 3 cut(s) 168, 281, 457
BspANI GGCC 1 cut(s) 351
BspFNI CGCG 4 cut(s) 50, 211, 213, 451
BspLI GGNNCC 2 cut(s) 352, 585
BspPI GGATC 1 cut(s) 452
BspT104I TTCGAA 2 cut(s) 506, 541
BspT107I GGYRCC 1 cut(s) 583
BsrBI CCGCTC 1 cut(s) 291
BssMI GATC 3 cut(s) 168, 281, 457
BssNI GRCGYC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 24
BstBI TTCGAA 2 cut(s) 506, 541
BstC8I GCNNGC 2 cut(s) 215, 515
BstF5I GGATG 3 cut(s) 130, 374, 439
BstFNI CGCG 4 cut(s) 50, 211, 213, 451
BstHHI GCGC 4 cut(s) 52, 213, 270, 502
BstKTI GATC 3 cut(s) 171, 284, 460
BstMBI GATC 3 cut(s) 168, 281, 457
BstMWI GCNNNNNNNGC 8 cut(s) 214, 274, 348, 372, 381, 384, 387, 390
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 519
BstUI CGCG 4 cut(s) 50, 211, 213, 451
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 1 cut(s) 351
BtgZI GCGATG 2 cut(s) 309, 579
BtsCI GGATG 3 cut(s) 130, 374, 439
Cac8I GCNNGC 2 cut(s) 215, 515
CfoI GCGC 4 cut(s) 52, 213, 270, 502
Cfr13I GGNCC 2 cut(s) 350, 453
CpoI CGGWCCG 1 cut(s) 453
CseI GACGC 2 cut(s) 32, 203
CspI CGGWCCG 1 cut(s) 453
CviJI RGCY 3 cut(s) 38, 351, 599
CviKI_1 RGCY 3 cut(s) 38, 351, 599
DpnI GATC 3 cut(s) 170, 283, 459
DpnII GATC 3 cut(s) 168, 281, 457
EciI GGCGGA 4 cut(s) 163, 195, 292, 381
Eco47I GGWCC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 272
FaiI YATR 2 cut(s) 426, 590
FauI CCCGC 4 cut(s) 55, 251, 323, 386
FblI GTMKAC 2 cut(s) 192, 477
FokI GGATG 3 cut(s) 117, 381, 446
FspBI CTAG 1 cut(s) 59
GlaI GCGC 4 cut(s) 51, 212, 269, 501
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 1 cut(s) 351
HapII CCGG 1 cut(s) 461
HgaI GACGC 2 cut(s) 32, 203
HhaI GCGC 4 cut(s) 52, 213, 270, 502
Hin1I GRCGYC 1 cut(s) 24
Hin6I GCGC 4 cut(s) 50, 211, 268, 500
HinP1I GCGC 4 cut(s) 50, 211, 268, 500
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 8 cut(s) 79, 125, 140, 299, 414, 437, 538, 543
HpaII CCGG 1 cut(s) 461
HphI GGTGA 4 cut(s) 83, 88, 496, 547
Hpy166II GTNNAC 3 cut(s) 193, 478, 517
Hpy188I TCNGA 2 cut(s) 419, 457
Hpy188III TCNNGA 4 cut(s) 76, 134, 166, 529
Hpy8I GTNNAC 3 cut(s) 193, 478, 517
HpyAV CCTTC 2 cut(s) 187, 574
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 517
HpyF10VI GCNNNNNNNGC 8 cut(s) 214, 274, 348, 372, 381, 384, 387, 390
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 24
HspAI GCGC 4 cut(s) 50, 211, 268, 500
Kzo9I GATC 3 cut(s) 168, 281, 457
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 5 cut(s) 38, 179, 259, 286, 474
LweI GCATC 1 cut(s) 556
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 117
MalI GATC 3 cut(s) 170, 283, 459
MbiI CCGCTC 1 cut(s) 291
MboI GATC 3 cut(s) 168, 281, 457
MboII GAAGA 2 cut(s) 175, 328
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 3 cut(s) 70, 403, 508
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 5 cut(s) 177, 246, 327, 380, 473
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MvnI CGCG 4 cut(s) 50, 211, 213, 451
MwoI GCNNNNNNNGC 8 cut(s) 214, 274, 348, 372, 381, 384, 387, 390
NdeII GATC 3 cut(s) 168, 281, 457
NlaIV GGNNCC 2 cut(s) 352, 585
NspV TTCGAA 2 cut(s) 506, 541
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 561
PfeI GAWTC 7 cut(s) 79, 125, 140, 414, 437, 538, 543
PflFI GACNNNGTC 1 cut(s) 197
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 352, 585
PspPI GGNCC 2 cut(s) 350, 453
PsuI RGATCY 1 cut(s) 168
PsyI GACNNNGTC 1 cut(s) 197
Rsr2I CGGWCCG 1 cut(s) 453
RsrII CGGWCCG 1 cut(s) 453
SalI GTCGAC 1 cut(s) 191
Sau3AI GATC 3 cut(s) 168, 281, 457
Sau96I GGNCC 2 cut(s) 350, 453
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 519
SetI ASST 5 cut(s) 96, 101, 120, 486, 585
SfaNI GCATC 1 cut(s) 556
SfuI TTCGAA 2 cut(s) 506, 541
SgrDI CGTCGACG 1 cut(s) 191
SinI GGWCC 1 cut(s) 453
Sse9I AATT 3 cut(s) 70, 403, 508
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 1 cut(s) 120
TaqI TCGA 6 cut(s) 192, 287, 408, 468, 506, 541
TaqII GACCGA 1 cut(s) 592
TasI AATT 3 cut(s) 70, 403, 508
TfiI GAWTC 7 cut(s) 79, 125, 140, 414, 437, 538, 543
TspDTI ATGAA 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 197
VneI GTGCAC 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 2 cut(s) 70, 403
XmiI GTMKAC 2 cut(s) 192, 477
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.