Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

36624209 .. 36669511

Gene Structure 45303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG341300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGAACCTCAAGCTTCCGATCATTAAGCCCGGTGGCCAGGAGCTCAAAATTGAATCTGAGTCGCTCTCATCGATCCGTACTACAATATTTCGTAGTCTCAATGTCTGGAAGGCGTCTAAATCTGAGAACCGCAGCGACAACGGTGAGCGGCTGAGATCTAAAGCATCTGATACTTTCGAACCAGCTCCGCCACGTGACTTCCGGCCTAGGTATCGCTGTCGTGGCCTTCGTGTCTACTTGGTCACTTATCATGATATCAAGGACCTCTACAAGGCAATGCGATTGGGTCCTGAATGGCGGGCAGGGTTCTATCGCGATCAGATTCAGCAAGTTTGTGCTGCCGCGACTCGTTTTGCTATCTGCGCCTCCTCCTCTGCTTCTTCATCTTCTTCTTCACCTTTGGCGTTCCCAACAGGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

141

Amino Acids

15.85

Weight (kDa)

10.01

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	151
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	2 cut(s)	318, 347
AciI	CCGC	5 cut(s)	133, 151, 191, 301, 345
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	37
AcvI	CACGTG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	2 cut(s)	274, 419
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	3 cut(s)	16, 46, 188
AluI	AGCT	3 cut(s)	16, 46, 188
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	3 cut(s)	37, 206, 226
ApeKI	GCWGC	2 cut(s)	135, 341
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	265, 290
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	158, 390
AsuII	TTCGAA	1 cut(s)	180
AvaII	GGWCC	2 cut(s)	265, 290
AvrII	CCTAGG	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	48
BbrPI	CACGTG	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	147, 328
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	210
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	4 cut(s)	136, 152, 342, 345
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	4 cut(s)	137, 153, 343, 346
Bme1390I	CCNGG	2 cut(s)	33, 41
Bme18I	GGWCC	2 cut(s)	265, 290
BmgT120I	GGNCC	2 cut(s)	265, 290
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	33, 41
BmsI	GCATC	1 cut(s)	176
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
Bpu14I	TTCGAA	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 419
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	209
BseLI	CCNNNNNNNGG	2 cut(s)	274, 419
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	51, 117, 146
BseRI	GAGGAG	2 cut(s)	361, 364
BseXI	GCAGC	2 cut(s)	147, 328
Bsh1236I	CGCG	2 cut(s)	318, 347
BshFI	GGCC	3 cut(s)	39, 208, 228
BshVI	ATCGAT	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	33, 205
BslI	CCNNNNNNNGG	2 cut(s)	274, 419
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	39, 208, 228
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	21, 75, 158, 319
Bsp68I	TCGCGA	1 cut(s)	318
BspACI	CCGC	5 cut(s)	133, 151, 191, 301, 345
BspANI	GGCC	3 cut(s)	39, 208, 228
BspCNI	CTCAG	3 cut(s)	52, 118, 147
BspDI	ATCGAT	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	318, 347
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	4 cut(s)	21, 75, 158, 319
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	60, 126, 155
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstFNI	CGCG	2 cut(s)	318, 347
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	4 cut(s)	24, 78, 161, 322
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	4 cut(s)	21, 75, 158, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 365
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	31, 39
BstUI	CGCG	2 cut(s)	318, 347
BstV1I	GCAGC	2 cut(s)	147, 328
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	3 cut(s)	39, 208, 228
BsuTUI	ATCGAT	1 cut(s)	74
BtuMI	TCGCGA	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	265, 290
ClaI	ATCGAT	1 cut(s)	74
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	8 cut(s)	16, 31, 39, 46, 154, 188, 208, 228
CviKI_1	RGCY	8 cut(s)	16, 31, 39, 46, 154, 188, 208, 228
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	3 cut(s)	60, 126, 155
DpnI	GATC	4 cut(s)	23, 77, 160, 321
DpnII	GATC	4 cut(s)	21, 75, 158, 319
EaeI	YGGCCR	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	265, 290
Eco53kI	GAGCTC	1 cut(s)	46
Eco72I	CACGTG	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	2 cut(s)	265, 290
EcoRII	CCWGG	1 cut(s)	39
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	1 cut(s)	257
FaiI	YATR	1 cut(s)	255
FatI	CATG	1 cut(s)	253
FauI	CCCGC	1 cut(s)	294
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	4 cut(s)	136, 152, 342, 345
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	4 cut(s)	136, 152, 342, 345
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	4 cut(s)	136, 152, 342, 345
HaeIII	GGCC	3 cut(s)	39, 208, 228
HapII	CCGG	2 cut(s)	33, 205
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	4 cut(s)	56, 62, 325, 349
HpaII	CCGG	2 cut(s)	33, 205
HphI	GGTGA	2 cut(s)	158, 390
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	5 cut(s)	21, 61, 127, 172, 324
Hpy188III	TCNNGA	4 cut(s)	109, 254, 293, 317
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	106, 239
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 365
HpyF3I	CTNAG	3 cut(s)	60, 126, 155
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	4 cut(s)	21, 75, 158, 319
LmnI	GCTCC	2 cut(s)	43, 193
LpnPI	CCDG	9 cut(s)	26, 46, 53, 94, 198, 218, 291, 306, 402
Lsp1109I	GCAGC	2 cut(s)	147, 328
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	197, 244
MalI	GATC	4 cut(s)	23, 77, 160, 321
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	4 cut(s)	21, 75, 158, 319
MboII	GAAGA	5 cut(s)	16, 375, 381, 384, 387
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	39
MlyI	GAGTC	2 cut(s)	71, 343
MnlI	CCTC	6 cut(s)	20, 278, 379, 382, 385, 413
Mox20I	TGGCCA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	2 cut(s)	27, 424
Msp20I	TGGCCA	1 cut(s)	39
MspI	CCGG	2 cut(s)	33, 205
MspR9I	CCNGG	2 cut(s)	33, 41
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	2 cut(s)	318, 347
MwoI	GCNNNNNNNGC	2 cut(s)	225, 365
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	21, 75, 158, 319
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	197, 244
NruI	TCGCGA	1 cut(s)	318
NspV	TTCGAA	1 cut(s)	180
PagI	TCATGA	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 229
PfeI	GAWTC	2 cut(s)	56, 325
PkrI	GCNGC	4 cut(s)	137, 153, 343, 346
PleI	GAGTC	2 cut(s)	70, 343
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	2 cut(s)	70, 343
Ppu21I	YACGTR	1 cut(s)	197
PpuMI	RGGWCCY	2 cut(s)	265, 290
Psp124BI	GAGCTC	1 cut(s)	48
Psp5II	RGGWCCY	2 cut(s)	265, 290
Psp6I	CCWGG	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	265, 290
PspPPI	RGGWCCY	2 cut(s)	265, 290
PsuI	RGATCY	1 cut(s)	158
RruI	TCGCGA	1 cut(s)	318
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	27, 424
SatI	GCNGC	4 cut(s)	136, 152, 342, 345
Sau3AI	GATC	4 cut(s)	21, 75, 158, 319
Sau96I	GGNCC	2 cut(s)	265, 290
SchI	GAGTC	2 cut(s)	71, 343
ScrFI	CCNGG	2 cut(s)	33, 41
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	9 cut(s)	12, 18, 48, 190, 199, 215, 270, 403, 424
SfaNI	GCATC	1 cut(s)	176
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	2 cut(s)	265, 290
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	5 cut(s)	133, 151, 191, 301, 345
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	31, 39
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	74, 180
TasI	AATT	1 cut(s)	51
TauI	GCSGC	2 cut(s)	154, 347
TfiI	GAWTC	2 cut(s)	56, 325
Tru1I	TTAA	2 cut(s)	27, 424
Tru9I	TTAA	2 cut(s)	27, 424
TseFI	GTSAC	2 cut(s)	197, 244
TseI	GCWGC	2 cut(s)	135, 341
Tsp45I	GTSAC	2 cut(s)	197, 244
TspDTI	ATGAA	2 cut(s)	17, 375
TspGWI	ACGGA	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	265, 290
XagI	CCTNNNNNAGG	1 cut(s)	272
XmaJI	CCTAGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.