Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Reverse (-)

50953385 .. 50953811

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG399000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAGACTATTATTAAGCGTAGTGAAGAACTGAAGCGAGCTGATGCAGTGATGATAATGTATGCCTATGATCAGCCAATGACGCTTACTCGTATCTCTAGTTTCTGGCTCCCTGAGCTTCGTCTGTTGGAGGTGAATGTACTAGTAATTTTGGTTGGATGCAAGTTGGATTTGAGAGACGGGCATGATTTGAGGAGCATAGAGCAGGTGATGACACCGAGCATGGAGCGGTATAGGGAAATTGAGACTTGCATCGAGTGTTCTGCTGCTACTTTTAGATTTTGTATTCAGATTTTGTGCAAGAGCTTGAAGACTAAACAGCAATTTGCTTGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04137 ko04214 map04137 map04214

Pfam Domains

Protein Families

EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

112

Amino Acids

13.07

Weight (kDa)

6.57

Isoelectric Point (pI)

70.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
Acc36I	ACCTGC	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	229
AciI	CCGC	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	310
AhlI	ACTAGT	1 cut(s)	142
AluBI	AGCT	3 cut(s)	41, 118, 306
AluI	AGCT	3 cut(s)	41, 118, 306
Alw26I	GTCTC	2 cut(s)	171, 239
ApeKI	GCWGC	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	145, 220
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	171, 239
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	2 cut(s)	99, 143
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	110
BmsI	GCATC	3 cut(s)	34, 149, 261
BpiI	GAAGAC	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	114
BseGI	GGATG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	171, 239
BsmBI	CGTCTC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	110
BspMI	ACCTGC	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	229
BssMI	GATC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	2 cut(s)	171, 239
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 115
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	164
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	39
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	2 cut(s)	185, 223
CviJI	RGCY	5 cut(s)	41, 76, 109, 118, 306
CviKI_1	RGCY	5 cut(s)	41, 76, 109, 118, 306
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	2 cut(s)	188, 226
FaiI	YATR	6 cut(s)	63, 69, 186, 200, 224, 234
FatI	CATG	2 cut(s)	184, 222
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	99, 143
GluI	GCNGC	1 cut(s)	267
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	188, 226
HphI	GGTGA	2 cut(s)	145, 220
Hpy188I	TCNGA	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	47, 162, 252, 300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 115
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	188, 226
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	3 cut(s)	114, 195, 226
LpnPI	CCDG	3 cut(s)	91, 126, 191
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	34, 149, 261
MaeI	CTAG	2 cut(s)	99, 143
MalI	GATC	1 cut(s)	72
MbiI	CCGCTC	1 cut(s)	229
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	38, 322
MluCI	AATT	3 cut(s)	147, 240, 323
MmeI	TCCRAC	3 cut(s)	108, 136, 147
MnlI	CCTC	2 cut(s)	124, 186
MseI	TTAA	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	82, 115
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	188, 226
NlaIV	GGNNCC	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	110
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	70
SetI	ASST	5 cut(s)	43, 120, 135, 210, 308
SfaNI	GCATC	3 cut(s)	34, 149, 261
SpeI	ACTAGT	1 cut(s)	142
Sse9I	AATT	3 cut(s)	147, 240, 323
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	2 cut(s)	99, 143
TaqI	TCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	147, 240, 323
TatI	WGTACW	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	1 cut(s)	266
TspRI	CASTG	1 cut(s)	54
XspI	CTAG	2 cut(s)	99, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.