Rh4AG248500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001308
Physical Location & Seq
Reverse (-)
56134113 .. 56134718
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG248500.1

Sequence Viewer

Length: 483 bp
ATGGACATCTCCCTCCTCTACGACGCCGTTTCAGTAGCCAACACCCCCGCGCAAGGTCTAGGGTTCTCAAATTTCCCGATTCGCAACCATCACCTCACCTCCACCAACCAAATCTCCGTCGCCGATTCCCACCCCGACGAATCCCCACCGTCCAACTCCTCCCTCCAGATCTCCGCCTTCATCTGCCCCGTCGACGCCGTCGCTCCGCCGCGCGTGCGTTCCAACTCCTACAAAACCGCCACCCGCACCCTCCTCCGCAAGAAGCGGCGCACCAGGCGGAGATCATTCGGAGGGCATAATTGGGATGATTCGTCGTCGTCGCGGTCCGATCCGGCGTTCGATTTCGTCTACGAGGTGATGGGTTGGATTGCGCTTTCGAATTGCGTGCACTTTGCTTTCAAGAGGGTGATTCGAATCGTGGCGGATGGGTTAGGCGATGCGGAGAGAGAGAAGGTGCCTATGAGATTGGCTTCGGTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

9.45

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 454
AccI GTMKAC 2 cut(s) 192, 348
AccII CGCG 4 cut(s) 50, 211, 213, 322
AclWI GGATC 1 cut(s) 323
AcsI RAATTY 1 cut(s) 70
AcyI GRCGYC 2 cut(s) 24, 195
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 400
AjnI CCWGG 1 cut(s) 272
Alw21I GWGCWC 1 cut(s) 390
Alw44I GTGCAC 1 cut(s) 386
AlwI GGATC 1 cut(s) 323
ApaLI GTGCAC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 70
AspLEI GCGC 4 cut(s) 52, 213, 270, 373
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 4 cut(s) 83, 88, 367, 418
AsuII TTCGAA 2 cut(s) 377, 412
AvaII GGWCC 1 cut(s) 324
BaeGI GKGCMC 1 cut(s) 390
BanI GGYRCC 1 cut(s) 454
Bbv12I GWGCWC 1 cut(s) 390
BccI CCATC 3 cut(s) 96, 352, 419
BceAI ACGGC 2 cut(s) 11, 182
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciT130I CCWGG 1 cut(s) 274
BfaI CTAG 1 cut(s) 59
BglII AGATCT 1 cut(s) 168
BisI GCNGC 2 cut(s) 209, 266
BlsI GCNGC 2 cut(s) 210, 267
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 427
BpmI CTGGAG 1 cut(s) 149
Bpu14I TTCGAA 2 cut(s) 377, 412
BsaBI GATNNNNATC 1 cut(s) 413
BsaHI GRCGYC 2 cut(s) 24, 195
BsaXI ACNNNNNCTCC 4 cut(s) 83, 98, 113, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 413
BseBI CCWGG 1 cut(s) 274
BseGI GGATG 2 cut(s) 310, 430
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 1 cut(s) 53
BseRI GAGGAG 3 cut(s) 5, 148, 242
BseSI GKGCMC 1 cut(s) 390
Bsh1236I CGCG 4 cut(s) 50, 211, 213, 322
BshNI GGYRCC 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 53
Bsp119I TTCGAA 2 cut(s) 377, 412
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 3 cut(s) 168, 281, 328
BspFNI CGCG 4 cut(s) 50, 211, 213, 322
BspLI GGNNCC 1 cut(s) 456
BspPI GGATC 1 cut(s) 323
BspT104I TTCGAA 2 cut(s) 377, 412
BspT107I GGYRCC 1 cut(s) 454
BssMI GATC 3 cut(s) 168, 281, 328
BssNI GRCGYC 2 cut(s) 24, 195
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 150
BstACI GRCGYC 2 cut(s) 24, 195
BstBI TTCGAA 2 cut(s) 377, 412
BstC8I GCNNGC 2 cut(s) 215, 386
BstF5I GGATG 2 cut(s) 310, 430
BstFNI CGCG 4 cut(s) 50, 211, 213, 322
BstHHI GCGC 4 cut(s) 52, 213, 270, 373
BstKTI GATC 3 cut(s) 171, 284, 331
BstMBI GATC 3 cut(s) 168, 281, 328
BstMWI GCNNNNNNNGC 2 cut(s) 214, 274
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 390
BstUI CGCG 4 cut(s) 50, 211, 213, 322
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 2 cut(s) 310, 430
Cac8I GCNNGC 2 cut(s) 215, 386
CfoI GCGC 4 cut(s) 52, 213, 270, 373
Cfr13I GGNCC 1 cut(s) 324
CpoI CGGWCCG 1 cut(s) 324
CseI GACGC 2 cut(s) 32, 203
CspI CGGWCCG 1 cut(s) 324
CviJI RGCY 2 cut(s) 38, 470
CviKI_1 RGCY 2 cut(s) 38, 470
DpnI GATC 3 cut(s) 170, 283, 330
DpnII GATC 3 cut(s) 168, 281, 328
EciI GGCGGA 4 cut(s) 163, 195, 292, 437
Eco47I GGWCC 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 272
FaiI YATR 2 cut(s) 297, 461
FauI CCCGC 2 cut(s) 55, 251
FblI GTMKAC 2 cut(s) 192, 348
Fnu4HI GCNGC 2 cut(s) 209, 266
FokI GGATG 2 cut(s) 317, 437
Fsp4HI GCNGC 2 cut(s) 209, 266
FspBI CTAG 1 cut(s) 59
GlaI GCGC 4 cut(s) 51, 212, 269, 372
GluI GCNGC 2 cut(s) 209, 266
GsuI CTGGAG 1 cut(s) 149
HapII CCGG 1 cut(s) 332
HgaI GACGC 2 cut(s) 32, 203
HhaI GCGC 4 cut(s) 52, 213, 270, 373
Hin1I GRCGYC 2 cut(s) 24, 195
Hin6I GCGC 4 cut(s) 50, 211, 268, 371
HinP1I GCGC 4 cut(s) 50, 211, 268, 371
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 6 cut(s) 79, 125, 140, 308, 409, 414
HpaII CCGG 1 cut(s) 332
HphI GGTGA 4 cut(s) 83, 88, 367, 418
Hpy166II GTNNAC 3 cut(s) 193, 349, 388
Hpy188I TCNGA 2 cut(s) 290, 328
Hpy188III TCNNGA 3 cut(s) 76, 166, 400
Hpy8I GTNNAC 3 cut(s) 193, 349, 388
Hpy99I CGWCG 9 cut(s) 26, 122, 140, 194, 197, 203, 316, 319, 322
HpyAV CCTTC 2 cut(s) 187, 445
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 274
Hsp92I GRCGYC 2 cut(s) 24, 195
HspAI GCGC 4 cut(s) 50, 211, 268, 371
Kzo9I GATC 3 cut(s) 168, 281, 328
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 4 cut(s) 179, 259, 286, 345
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 59
MalI GATC 3 cut(s) 170, 283, 330
MboI GATC 3 cut(s) 168, 281, 328
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 3 cut(s) 70, 298, 379
MmeI TCCRAC 3 cut(s) 177, 246, 344
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MvnI CGCG 4 cut(s) 50, 211, 213, 322
MwoI GCNNNNNNNGC 2 cut(s) 214, 274
NdeII GATC 3 cut(s) 168, 281, 328
NlaIV GGNNCC 1 cut(s) 456
NspV TTCGAA 2 cut(s) 377, 412
PfeI GAWTC 6 cut(s) 79, 125, 140, 308, 409, 414
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 210, 267
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 1 cut(s) 324
PsuI RGATCY 1 cut(s) 168
PsyI GACNNNGTC 1 cut(s) 197
Rsr2I CGGWCCG 1 cut(s) 324
RsrII CGGWCCG 1 cut(s) 324
SalI GTCGAC 1 cut(s) 191
SatI GCNGC 2 cut(s) 209, 266
Sau3AI GATC 3 cut(s) 168, 281, 328
Sau96I GGNCC 1 cut(s) 324
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 390
SetI ASST 5 cut(s) 58, 96, 101, 357, 456
SfaNI GCATC 1 cut(s) 427
SfuI TTCGAA 2 cut(s) 377, 412
SgrDI CGTCGACG 1 cut(s) 191
SinI GGWCC 1 cut(s) 324
Sse9I AATT 3 cut(s) 70, 298, 379
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 150
TaqI TCGA 4 cut(s) 192, 339, 377, 412
TaqII GACCGA 1 cut(s) 463
TasI AATT 3 cut(s) 70, 298, 379
TauI GCSGC 2 cut(s) 211, 268
TfiI GAWTC 6 cut(s) 79, 125, 140, 308, 409, 414
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 197
VneI GTGCAC 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 324
XapI RAATTY 1 cut(s) 70
XmiI GTMKAC 2 cut(s) 192, 348
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.