Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

37888693 .. 37892766

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG338900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGAACCTCAAGCTTCCGATCATTAAGCCCGGCGGCCAGGAGCTCAAAATTGAATCCGAGTCGCTCCCATCGATCCATACTACAATATTTCATAGTCTCAATGTCTGGAAGGCGTCTGAATCAGAGAACCGCAGCGACAACGGCAAGCGGCTGAGATCTAAAGCATCCGATACTTTCGAACCAGCTCCGCCACGTGACTTCTGGCCTAGGTATCGCTGTCGTGGCCTTCGTGTCTACTTGGTCAGTGAGCAGTTGTACAACCTCGGTGGATTAATACGCGGCCAGCGGTATGATCTGGTCAACAAGATCGGCCATGAAAAGTCTCAAGTCTGCAACCGTCGCGAGCAGAAAACCTATTGCCGAGTAACTTCTTACACCTTTATCTCTGACGACGTCAAGGCGCGAAGTGAGGCTGAGATTGCTTCGCACCGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

146

Amino Acids

16.91

Weight (kDa)

9.67

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	399
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	282, 345, 406
AciI	CCGC	6 cut(s)	36, 133, 151, 191, 282, 289
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	3 cut(s)	37, 283, 313
AcsI	RAATTY	1 cut(s)	435
AcvI	CACGTG	1 cut(s)	197
AcyI	GRCGYC	2 cut(s)	116, 396
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	3 cut(s)	16, 46, 188
AluI	AGCT	3 cut(s)	16, 46, 188
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	2 cut(s)	104, 330
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	5 cut(s)	37, 206, 226, 283, 313
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	435
AseI	ATTAAT	1 cut(s)	275
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	406
AsuC2I	CCSGG	1 cut(s)	33
AsuII	TTCGAA	1 cut(s)	180
AvrII	CCTAGG	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	48
BbrPI	CACGTG	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	104, 330
BfaI	CTAG	1 cut(s)	210
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	4 cut(s)	37, 136, 152, 283
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	4 cut(s)	38, 137, 153, 284
Bme1390I	CCNGG	2 cut(s)	33, 41
BmrFI	CCNGG	2 cut(s)	33, 41
BmsI	GCATC	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	197
BsaHI	GRCGYC	2 cut(s)	116, 396
BsaJI	CCNNGG	2 cut(s)	209, 265
BseBI	CCWGG	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	209, 265
BseGI	GGATG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	146, 408
BseXI	GCAGC	1 cut(s)	147
Bsh1236I	CGCG	3 cut(s)	282, 345, 406
BshFI	GGCC	5 cut(s)	39, 208, 228, 285, 315
BshVI	ATCGAT	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	33
BsmAI	GTCTC	2 cut(s)	104, 330
BsnI	GGCC	5 cut(s)	39, 208, 228, 285, 315
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	5 cut(s)	21, 75, 158, 295, 309
Bsp68I	TCGCGA	1 cut(s)	345
BspACI	CCGC	6 cut(s)	36, 133, 151, 191, 282, 289
BspANI	GGCC	5 cut(s)	39, 208, 228, 285, 315
BspCNI	CTCAG	2 cut(s)	147, 409
BspDI	ATCGAT	1 cut(s)	74
BspFNI	CGCG	3 cut(s)	282, 345, 406
BspPI	GGATC	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	209, 265
BssMI	GATC	5 cut(s)	21, 75, 158, 295, 309
BssNI	GRCGYC	2 cut(s)	116, 396
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	341
BstACI	GRCGYC	2 cut(s)	116, 396
BstAUI	TGTACA	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	149, 287, 347
BstDEI	CTNAG	2 cut(s)	155, 417
BstF5I	GGATG	1 cut(s)	167
BstFNI	CGCG	3 cut(s)	282, 345, 406
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	5 cut(s)	24, 78, 161, 298, 312
BstMAI	GTCTC	2 cut(s)	104, 330
BstMBI	GATC	5 cut(s)	21, 75, 158, 295, 309
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 225, 342, 422
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	31, 39
BstUI	CGCG	3 cut(s)	282, 345, 406
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	5 cut(s)	39, 208, 228, 285, 315
BsuTUI	ATCGAT	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	253
BtuMI	TCGCGA	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	149, 287, 347
CfoI	GCGC	1 cut(s)	406
ClaI	ATCGAT	1 cut(s)	74
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	1 cut(s)	317
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	155, 417
DpnI	GATC	5 cut(s)	23, 77, 160, 297, 311
DpnII	GATC	5 cut(s)	21, 75, 158, 295, 309
EaeI	YGGCCR	3 cut(s)	37, 283, 313
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
Eco72I	CACGTG	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	1 cut(s)	320
FaiI	YATR	4 cut(s)	81, 96, 294, 318
FatI	CATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	4 cut(s)	37, 136, 152, 283
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	4 cut(s)	37, 136, 152, 283
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	4 cut(s)	37, 136, 152, 283
HaeIII	GGCC	5 cut(s)	39, 208, 228, 285, 315
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	2 cut(s)	116, 396
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	3 cut(s)	56, 62, 122
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	2 cut(s)	238, 304
Hpy188I	TCNGA	6 cut(s)	21, 61, 121, 127, 172, 391
Hpy188III	TCNNGA	2 cut(s)	109, 344
Hpy8I	GTNNAC	2 cut(s)	238, 304
Hpy99I	CGWCG	2 cut(s)	345, 398
HpyAV	CCTTC	2 cut(s)	106, 239
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	2 cut(s)	196, 396
HpyCH4V	TGCA	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 225, 342, 422
HpyF3I	CTNAG	2 cut(s)	155, 417
HpySE526I	ACGT	2 cut(s)	196, 396
Hsp92I	GRCGYC	2 cut(s)	116, 396
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	404
Kzo9I	GATC	5 cut(s)	21, 75, 158, 295, 309
LmnI	GCTCC	3 cut(s)	43, 72, 193
LpnPI	CCDG	8 cut(s)	26, 46, 53, 94, 190, 198, 284, 299
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	2 cut(s)	196, 396
MaeIII	GTNAC	2 cut(s)	197, 367
MalI	GATC	5 cut(s)	23, 77, 160, 297, 311
MboI	GATC	5 cut(s)	21, 75, 158, 295, 309
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	51, 435
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	3 cut(s)	20, 275, 406
MseI	TTAA	3 cut(s)	27, 275, 439
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	2 cut(s)	33, 41
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	3 cut(s)	282, 345, 406
MwoI	GCNNNNNNNGC	4 cut(s)	144, 225, 342, 422
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	5 cut(s)	21, 75, 158, 295, 309
NlaIII	CATG	1 cut(s)	320
NmeAIII	GCCGAG	1 cut(s)	389
NmuCI	GTSAC	1 cut(s)	197
NruI	TCGCGA	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 229
PfeI	GAWTC	2 cut(s)	56, 122
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	38, 137, 153, 284
PleI	GAGTC	1 cut(s)	70
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	197
PshBI	ATTAAT	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	395
RruI	TCGCGA	1 cut(s)	345
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	27, 275, 439
SatI	GCNGC	4 cut(s)	37, 136, 152, 283
Sau3AI	GATC	5 cut(s)	21, 75, 158, 295, 309
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	33, 41
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	176
SfuI	TTCGAA	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	11, 327
SmoI	CTYRAG	2 cut(s)	11, 327
Sse9I	AATT	2 cut(s)	51, 435
SsiI	CCGC	6 cut(s)	36, 133, 151, 191, 282, 289
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	31, 39
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	2 cut(s)	199, 399
TaqI	TCGA	2 cut(s)	74, 180
TasI	AATT	2 cut(s)	51, 435
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	3 cut(s)	39, 154, 285
TfiI	GAWTC	2 cut(s)	56, 122
Tru1I	TTAA	3 cut(s)	27, 275, 439
Tru9I	TTAA	3 cut(s)	27, 275, 439
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	17, 83, 333
TspRI	CASTG	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	395
VspI	ATTAAT	1 cut(s)	275
XapI	RAATTY	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XmaJI	CCTAGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	210
ZraI	GACGTC	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.