Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

23034094 .. 23035846

Gene Structure 1753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCTCCTCTGGAAGGAGAATTGTATTTCCCTCTTAGCTTTACCATAGATAATGAACTAGTACTCCTTAGCTTAAAAGATGAAGATGAAGATGAAGATGGAATAGTATTTGATCAAATGGCTTTATATAACCTTGGATCCAAACTACAATTAAAACTGAAATTAGGTTGGCACATATTGGTGGCAAGTTTTATATATGCTGTTGTAAAGCTCGATCATTGCTCCGACGAAAATGAATGGAGGCTGCACAAGAAGATGAAGAACCTCAAGCTTCCGATCATTGAGTCCGGCGGCCGGGAGCTCAAAATTGAATTCGAGTCGTTCTCCTCAATCCGTACCGCAATATTTCGTAGTCTCAATGTCCGAAAGGCGTTTGAATCGGAGAACCGCGGTGACAACGACGAGCGGTTGAGATCCGAAGCATCCGATACTTTCGAACCGGCTCGCCACTCGACTTCCAACCTCGGCATCGTTTTCGTGGCCTTCGTGTCTACAAGATCTAGTCGGCGGTATGATCCGGTCAACAAGATCCGGTTAGCGAGTAACTTCTTACGCCTTTATCTCCGACGGCCTCGAGGCGCGATCCGATCCGTCATTCAATTTCATCTACGAGGTGGTGGTTTGGATTGGTCTTTCAAATTGCGTGCACTTTGCTTTTCAAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

222

Amino Acids

25.59

Weight (kDa)

9.05

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	573
AccBSI	CCGCTC	1 cut(s)	406
AccI	GTMKAC	1 cut(s)	491
AccII	CGCG	2 cut(s)	390, 581
AciI	CCGC	6 cut(s)	291, 339, 388, 390, 406, 508
AclWI	GGATC	7 cut(s)	132, 145, 408, 509, 523, 577, 582
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	2 cut(s)	63, 337
AfiI	CCNNNNNNNGG	2 cut(s)	14, 294
AgsI	TTSAA	5 cut(s)	311, 377, 599, 637, 660
AhlI	ACTAGT	1 cut(s)	58
AloI	GAACNNNNNNTCC	2 cut(s)	48, 80
AluBI	AGCT	5 cut(s)	39, 72, 211, 271, 301
AluI	AGCT	5 cut(s)	39, 72, 211, 271, 301
Alw21I	GWGCWC	2 cut(s)	303, 649
Alw26I	GTCTC	2 cut(s)	9, 359
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	7 cut(s)	132, 145, 408, 509, 523, 577, 582
Ama87I	CYCGRG	1 cut(s)	573
AoxI	GGCC	3 cut(s)	292, 480, 569
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	581
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	404
AsuII	TTCGAA	1 cut(s)	435
AvaI	CYCGRG	1 cut(s)	573
BaeGI	GKGCMC	1 cut(s)	649
BamHI	GGATCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	303, 649
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	584
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	2 cut(s)	9, 359
BcuI	ACTAGT	1 cut(s)	58
BfaI	CTAG	2 cut(s)	59, 501
BglII	AGATCT	1 cut(s)	497
BisI	GCNGC	2 cut(s)	245, 292
BlsI	GCNGC	2 cut(s)	246, 293
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	573
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	2 cut(s)	431, 477
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu10I	CCTNAGC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	133, 388, 463
BsaWI	WCCGGW	2 cut(s)	517, 531
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 294
Bse118I	RCCGGY	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	133, 388, 463
BseGI	GGATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	2 cut(s)	14, 294
BseMI	GCAATG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	649
BseX3I	CGGCCG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	2 cut(s)	390, 581
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	3 cut(s)	294, 482, 571
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	303, 649
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	5 cut(s)	288, 295, 440, 518, 532
BslI	CCNNNNNNNGG	2 cut(s)	14, 294
BsmAI	GTCTC	2 cut(s)	9, 359
BsnI	GGCC	3 cut(s)	294, 482, 571
BsoBI	CYCGRG	1 cut(s)	573
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	303, 649
BspACI	CCGC	6 cut(s)	291, 339, 388, 390, 406, 508
BspANI	GGCC	3 cut(s)	294, 482, 571
BspFNI	CGCG	2 cut(s)	390, 581
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	7 cut(s)	132, 145, 408, 509, 523, 577, 582
BspT104I	TTCGAA	1 cut(s)	435
BsrBI	CCGCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	3 cut(s)	133, 388, 463
BssT1I	CCWWGG	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	445, 645
BstDEI	CTNAG	2 cut(s)	35, 68
BstDSI	CCRYGG	1 cut(s)	388
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	422
BstFNI	CGCG	2 cut(s)	390, 581
BstHHI	GCGC	1 cut(s)	581
BstMAI	GTCTC	2 cut(s)	9, 359
BstMCI	CGRYCG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	649
BstUI	CGCG	2 cut(s)	390, 581
BstV1I	GCAGC	1 cut(s)	231
BstX2I	RGATCY	4 cut(s)	137, 413, 497, 528
BstYI	RGATCY	4 cut(s)	137, 413, 497, 528
BstZI	CGGCCG	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	294, 482, 571
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	445, 645
CfoI	GCGC	1 cut(s)	581
Cfr10I	RCCGGY	1 cut(s)	439
Cfr42I	CCGCGG	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	62, 336
CviQI	GTAC	2 cut(s)	62, 336
DdeI	CTNAG	2 cut(s)	35, 68
EaeI	YGGCCR	1 cut(s)	292
EagI	CGGCCG	1 cut(s)	292
Ecl136II	GAGCTC	1 cut(s)	301
EclXI	CGGCCG	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	303
Eco52I	CGGCCG	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	573
EcoICRI	GAGCTC	1 cut(s)	301
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	133
FaiI	YATR	8 cut(s)	47, 127, 129, 176, 194, 196, 198, 513
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	2 cut(s)	245, 292
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	245, 292
FspBI	CTAG	2 cut(s)	59, 501
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	2 cut(s)	245, 292
HaeIII	GGCC	3 cut(s)	294, 482, 571
HapII	CCGG	5 cut(s)	288, 295, 440, 518, 532
HhaI	GCGC	1 cut(s)	581
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	3 cut(s)	284, 317, 377
HpaII	CCGG	5 cut(s)	288, 295, 440, 518, 532
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	3 cut(s)	492, 523, 647
Hpy188I	TCNGA	8 cut(s)	226, 276, 365, 382, 418, 427, 566, 587
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	3 cut(s)	492, 523, 647
Hpy99I	CGWCG	3 cut(s)	230, 404, 570
HpyAV	CCTTC	2 cut(s)	8, 493
HpyCH4V	TGCA	2 cut(s)	247, 647
HpyF3I	CTNAG	2 cut(s)	35, 68
HspAI	GCGC	1 cut(s)	579
Ksp22I	TGATCA	1 cut(s)	112
KspI	CCGCGG	1 cut(s)	391
LmnI	GCTCC	2 cut(s)	227, 298
LpnPI	CCDG	5 cut(s)	301, 308, 453, 531, 545
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	2 cut(s)	431, 477
MaeI	CTAG	2 cut(s)	59, 501
MaeIII	GTNAC	2 cut(s)	392, 542
MbiI	CCGCTC	1 cut(s)	406
MboII	GAAGA	5 cut(s)	95, 101, 107, 265, 271
MflI	RGATCY	4 cut(s)	137, 413, 497, 528
MhlI	GDGCHC	2 cut(s)	303, 649
MluCI	AATT	7 cut(s)	20, 149, 161, 306, 311, 599, 638
MlyI	GAGTC	2 cut(s)	293, 326
MmeI	TCCRAC	3 cut(s)	249, 483, 589
MnlI	CCTC	9 cut(s)	18, 42, 234, 275, 337, 473, 569, 582, 605
MseI	TTAA	2 cut(s)	74, 152
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	5 cut(s)	288, 295, 440, 518, 532
MspR9I	CCNGG	1 cut(s)	296
MvnI	CGCG	2 cut(s)	390, 581
NciI	CCSGG	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	444
NmuCI	GTSAC	1 cut(s)	392
NspV	TTCGAA	1 cut(s)	435
PaeR7I	CTCGAG	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	246, 293
PleI	GAGTC	2 cut(s)	292, 325
PpsI	GAGTC	2 cut(s)	292, 325
Psp124BI	GAGCTC	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	139
PspXI	VCTCGAGB	1 cut(s)	573
PsuI	RGATCY	4 cut(s)	137, 413, 497, 528
RsaI	GTAC	2 cut(s)	63, 337
RsaNI	GTAC	2 cut(s)	62, 336
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	74, 152
SatI	GCNGC	2 cut(s)	245, 292
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	2 cut(s)	293, 326
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	303, 649
SfaNI	GCATC	2 cut(s)	431, 477
Sfr274I	CTCGAG	1 cut(s)	573
Sfr303I	CCGCGG	1 cut(s)	391
SfuI	TTCGAA	1 cut(s)	435
SgrBI	CCGCGG	1 cut(s)	391
SlaI	CTCGAG	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	266, 573
SmoI	CTYRAG	2 cut(s)	266, 573
SpeI	ACTAGT	1 cut(s)	58
Sse9I	AATT	7 cut(s)	20, 149, 161, 306, 311, 599, 638
SsiI	CCGC	6 cut(s)	291, 339, 388, 390, 406, 508
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	2 cut(s)	59, 501
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	133
TaqI	TCGA	5 cut(s)	213, 315, 435, 452, 574
TasI	AATT	7 cut(s)	20, 149, 161, 306, 311, 599, 638
TatI	WGTACW	1 cut(s)	61
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	74, 152
Tru9I	TTAA	2 cut(s)	74, 152
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	7 cut(s)	69, 96, 102, 108, 249, 272, 593
TspGWI	ACGGA	2 cut(s)	323, 580
VneI	GTGCAC	1 cut(s)	645
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	311
XhoI	CTCGAG	1 cut(s)	573
XmiI	GTMKAC	1 cut(s)	491
XspI	CTAG	2 cut(s)	59, 501
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.