Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Reverse (-)

49532683 .. 49532895

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG379400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCTAGCCACAGCTAAAACGGCGCAAAGCTCTGATCATCGCTCCGACGAAAATGAATGGCGACCGCACAAGAAGATGAAGAACCTCAAGCTTCAGATCATCGAGCTCGGCGGCCAGGAGCTCAAAATCGAAGCCGAGTCGCTTTCCTTGAGCCGTACTCCAATATTTCGTAGTCTCATTGTCCAGAAGGCATCTGAATCGGAGAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

70

Amino Acids

7.91

Weight (kDa)

8.11

Isoelectric Point (pI)

67.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 111
AcoI	YGGCCR	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	5 cut(s)	14, 30, 91, 106, 121
AluI	AGCT	5 cut(s)	14, 30, 91, 106, 121
Alw21I	GWGCWC	2 cut(s)	108, 123
Alw26I	GTCTC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	25
AsuNHI	GCTAGC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	108, 123
Bbv12I	GWGCWC	2 cut(s)	108, 123
BceAI	ACGGC	2 cut(s)	36, 138
BcgI	CGANNNNNNTGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	5
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	200
BmtI	GCTAGC	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpuEI	CTTGAG	2 cut(s)	71, 169
BseBI	CCWGG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	2 cut(s)	108, 123
BsmAI	GTCTC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	108, 123
Bsp143I	GATC	2 cut(s)	34, 96
BspACI	CCGC	2 cut(s)	65, 111
BspANI	GGCC	1 cut(s)	114
BspOI	GCTAGC	1 cut(s)	8
BssMI	GATC	2 cut(s)	34, 96
Bst2UI	CCWGG	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	37, 99
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	2 cut(s)	34, 96
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	156
CviJI	RGCY	9 cut(s)	8, 14, 30, 91, 106, 114, 121, 134, 153
CviKI_1	RGCY	9 cut(s)	8, 14, 30, 91, 106, 114, 121, 134, 153
CviQI	GTAC	1 cut(s)	156
DpnI	GATC	2 cut(s)	36, 98
DpnII	GATC	2 cut(s)	34, 96
EaeI	YGGCCR	1 cut(s)	112
Ecl136II	GAGCTC	2 cut(s)	106, 121
Eco24I	GRGCYC	2 cut(s)	108, 123
Eco53kI	GAGCTC	2 cut(s)	106, 121
Eco57I	CTGAAG	1 cut(s)	77
EcoICRI	GAGCTC	2 cut(s)	106, 121
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	2 cut(s)	108, 123
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	112
FriOI	GRGCYC	2 cut(s)	108, 123
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	137, 197
Hpy188I	TCNGA	5 cut(s)	34, 46, 96, 196, 202
Hpy188III	TCNNGA	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	34, 96
LmnI	GCTCC	2 cut(s)	47, 118
LpnPI	CCDG	3 cut(s)	101, 128, 197
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	5
MalI	GATC	2 cut(s)	36, 98
MboI	GATC	2 cut(s)	34, 96
MboII	GAAGA	2 cut(s)	85, 91
MhlI	GDGCHC	2 cut(s)	108, 123
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	2 cut(s)	34, 96
NheI	GCTAGC	1 cut(s)	4
NmeAIII	GCCGAG	2 cut(s)	87, 160
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp124BI	GAGCTC	2 cut(s)	108, 123
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SacI	GAGCTC	2 cut(s)	108, 123
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	2 cut(s)	34, 96
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	108, 123
SetI	ASST	6 cut(s)	16, 32, 87, 93, 108, 123
SfaNI	GCATC	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	86, 148
SmoI	CTYRAG	2 cut(s)	86, 148
SsiI	CCGC	2 cut(s)	65, 111
SspI	AATATT	1 cut(s)	165
SspMI	CTAG	1 cut(s)	5
SstI	GAGCTC	2 cut(s)	108, 123
StyD4I	CCNGG	1 cut(s)	114
TaqI	TCGA	2 cut(s)	102, 129
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	69, 92
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.