Rw4G021280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001308
Physical Location & Seq
Reverse (-)
45947897 .. 45951458
3562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G021280.1

Sequence Viewer

Length: 606 bp
ATGGACATCTCCCTCCTCTACGACGCCGTTTCAGTAGCCAACACCCCCGCGCAGGGTCTAGGGTTCTCAAATTTCCCGATTCGCAACCATCACGTCACCTCCACCAACCAAATCTCCGTCGCCGATTCCCACCCCGACGAATCCCCACCGTCCAACCCCTCTCTCCAGATCTCCGCCTTCATCTTCCCCGTCGACGCCGTCGCTCCGCCGCGCGTGCGTTCCAACTCCTACAAAACCGCCACCCGCACCCTCCTCCGCAAGAAGCGGCGCACCAGGAGGAGATCGTCGAGCGGCGATGATTCCAACGACGGCGGCGGCGAGGAGGACGGCGGGTTCTTCGGCGGCGACGGCCCGTTTTTCAACGGCGGATGGGGCGGCGGCGGCGGCCGGGGTTGGAATTTCGATAGATTCGGAGGGCATAATTGGGATGATTCGTCGTCGTCGCGGTCCGATCCGGCGTTCGATTTCGTCTACGAGGTGATGGGTTGGATTGCGCTTTCGAATTGCGTACACTTTGCTTTCAAGAGGGTGATTCGAATCGTGGCGGATGGGTTAGGCGATGCGGAGAGAGAGAAGGTGCCTATGAGATTGGCTTCGGTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.82

Weight (kDa)

6.51

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 577
AccBSI CCGCTC 1 cut(s) 291
AccI GTMKAC 2 cut(s) 192, 471
AccII CGCG 4 cut(s) 50, 211, 213, 445
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 2 cut(s) 70, 397
AcyI GRCGYC 2 cut(s) 24, 195
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 2 cut(s) 52, 53
AgsI TTSAA 2 cut(s) 361, 523
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 272
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AlwI GGATC 1 cut(s) 446
AoxI GGCC 2 cut(s) 349, 385
ApoI RAATTY 2 cut(s) 70, 397
AspLEI GCGC 4 cut(s) 52, 213, 270, 496
AspS9I GGNCC 2 cut(s) 350, 447
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 88, 490, 541
AsuII TTCGAA 2 cut(s) 500, 535
AvaII GGWCC 1 cut(s) 447
BanI GGYRCC 1 cut(s) 577
BccI CCATC 4 cut(s) 96, 363, 475, 542
BceAI ACGGC 6 cut(s) 11, 182, 325, 343, 364, 379
BciT130I CCWGG 1 cut(s) 274
BcnI CCSGG 1 cut(s) 389
BfaI CTAG 1 cut(s) 59
BglII AGATCT 1 cut(s) 168
Bme1390I CCNGG 2 cut(s) 274, 389
Bme18I GGWCC 1 cut(s) 447
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 350, 447
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 2 cut(s) 274, 389
BmsI GCATC 1 cut(s) 550
BpmI CTGGAG 1 cut(s) 149
Bpu14I TTCGAA 2 cut(s) 500, 535
BpuMI CCSGG 1 cut(s) 389
BsaBI GATNNNNATC 1 cut(s) 536
BsaHI GRCGYC 2 cut(s) 24, 195
BsaJI CCNNGG 1 cut(s) 388
BsaXI ACNNNNNCTCC 4 cut(s) 83, 98, 113, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 53
Bse8I GATNNNNATC 1 cut(s) 536
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 3 cut(s) 374, 433, 553
BseJI GATNNNNATC 1 cut(s) 536
BseLI CCNNNNNNNGG 2 cut(s) 52, 53
BseRI GAGGAG 4 cut(s) 5, 242, 292, 335
BseX3I CGGCCG 1 cut(s) 385
Bsh1236I CGCG 4 cut(s) 50, 211, 213, 445
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 2 cut(s) 351, 387
BshNI GGYRCC 1 cut(s) 577
BsiEI CGRYCG 1 cut(s) 388
BsiSI CCGG 2 cut(s) 388, 455
BslI CCNNNNNNNGG 2 cut(s) 52, 53
BsnI GGCC 2 cut(s) 351, 387
Bsp119I TTCGAA 2 cut(s) 500, 535
Bsp143I GATC 3 cut(s) 168, 281, 451
BspANI GGCC 2 cut(s) 351, 387
BspFNI CGCG 4 cut(s) 50, 211, 213, 445
BspLI GGNNCC 1 cut(s) 579
BspPI GGATC 1 cut(s) 446
BspT104I TTCGAA 2 cut(s) 500, 535
BspT107I GGYRCC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 3 cut(s) 168, 281, 451
BssNI GRCGYC 2 cut(s) 24, 195
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 150
BstACI GRCGYC 2 cut(s) 24, 195
BstBI TTCGAA 2 cut(s) 500, 535
BstC8I GCNNGC 1 cut(s) 215
BstF5I GGATG 3 cut(s) 374, 433, 553
BstFNI CGCG 4 cut(s) 50, 211, 213, 445
BstHHI GCGC 4 cut(s) 52, 213, 270, 496
BstKTI GATC 3 cut(s) 171, 284, 454
BstMBI GATC 3 cut(s) 168, 281, 451
BstMCI CGRYCG 1 cut(s) 388
BstMWI GCNNNNNNNGC 5 cut(s) 214, 348, 372, 381, 384
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 272, 387
BstUI CGCG 4 cut(s) 50, 211, 213, 445
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BstZI CGGCCG 1 cut(s) 385
BsuRI GGCC 2 cut(s) 351, 387
BtgZI GCGATG 2 cut(s) 309, 573
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 3 cut(s) 374, 433, 553
Cac8I GCNNGC 1 cut(s) 215
CfoI GCGC 4 cut(s) 52, 213, 270, 496
Cfr13I GGNCC 2 cut(s) 350, 447
CpoI CGGWCCG 1 cut(s) 447
CseI GACGC 2 cut(s) 32, 203
Csp6I GTAC 1 cut(s) 509
CspI CGGWCCG 1 cut(s) 447
CviJI RGCY 4 cut(s) 38, 351, 387, 593
CviKI_1 RGCY 4 cut(s) 38, 351, 387, 593
CviQI GTAC 1 cut(s) 509
DpnI GATC 3 cut(s) 170, 283, 453
DpnII GATC 3 cut(s) 168, 281, 451
EaeI YGGCCR 1 cut(s) 385
EagI CGGCCG 1 cut(s) 385
EciI GGCGGA 4 cut(s) 163, 195, 381, 560
EclXI CGGCCG 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 447
Eco52I CGGCCG 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 272
FaiI YATR 2 cut(s) 420, 584
FauI CCCGC 3 cut(s) 55, 251, 323
FblI GTMKAC 2 cut(s) 192, 471
FokI GGATG 3 cut(s) 381, 440, 560
FspBI CTAG 1 cut(s) 59
GlaI GCGC 4 cut(s) 51, 212, 269, 495
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 2 cut(s) 351, 387
HapII CCGG 2 cut(s) 388, 455
HgaI GACGC 2 cut(s) 32, 203
HhaI GCGC 4 cut(s) 52, 213, 270, 496
Hin1I GRCGYC 2 cut(s) 24, 195
Hin6I GCGC 4 cut(s) 50, 211, 268, 494
HinP1I GCGC 4 cut(s) 50, 211, 268, 494
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 8 cut(s) 79, 125, 140, 299, 408, 431, 532, 537
HpaII CCGG 2 cut(s) 388, 455
HphI GGTGA 3 cut(s) 88, 490, 541
Hpy166II GTNNAC 3 cut(s) 193, 472, 511
Hpy188I TCNGA 2 cut(s) 413, 451
Hpy188III TCNNGA 3 cut(s) 76, 166, 523
Hpy8I GTNNAC 3 cut(s) 193, 472, 511
HpyAV CCTTC 2 cut(s) 187, 568
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 348, 372, 381, 384
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 2 cut(s) 24, 195
HspAI GCGC 4 cut(s) 50, 211, 268, 494
Kzo9I GATC 3 cut(s) 168, 281, 451
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 6 cut(s) 38, 179, 259, 286, 401, 468
LweI GCATC 1 cut(s) 550
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 94
MalI GATC 3 cut(s) 170, 283, 453
MbiI CCGCTC 1 cut(s) 291
MboI GATC 3 cut(s) 168, 281, 451
MboII GAAGA 2 cut(s) 175, 328
MflI RGATCY 1 cut(s) 168
MluCI AATT 4 cut(s) 70, 397, 421, 502
MmeI TCCRAC 5 cut(s) 177, 246, 327, 374, 467
MspI CCGG 2 cut(s) 388, 455
MspR9I CCNGG 2 cut(s) 274, 389
MvaI CCWGG 1 cut(s) 274
MvnI CGCG 4 cut(s) 50, 211, 213, 445
MwoI GCNNNNNNNGC 5 cut(s) 214, 348, 372, 381, 384
NciI CCSGG 1 cut(s) 389
NdeII GATC 3 cut(s) 168, 281, 451
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 94
NspV TTCGAA 2 cut(s) 500, 535
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 8 cut(s) 79, 125, 140, 299, 408, 431, 532, 537
PflFI GACNNNGTC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 2 cut(s) 350, 447
PsuI RGATCY 1 cut(s) 168
PsyI GACNNNGTC 1 cut(s) 197
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
Rsr2I CGGWCCG 1 cut(s) 447
RsrII CGGWCCG 1 cut(s) 447
SalI GTCGAC 1 cut(s) 191
Sau3AI GATC 3 cut(s) 168, 281, 451
Sau96I GGNCC 2 cut(s) 350, 447
ScrFI CCNGG 2 cut(s) 274, 389
SetI ASST 4 cut(s) 96, 101, 480, 579
SfaNI GCATC 1 cut(s) 550
SfuI TTCGAA 2 cut(s) 500, 535
SgrDI CGTCGACG 1 cut(s) 191
SinI GGWCC 1 cut(s) 447
Sse9I AATT 4 cut(s) 70, 397, 421, 502
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 272, 387
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 1 cut(s) 96
TaqI TCGA 6 cut(s) 192, 287, 402, 462, 500, 535
TaqII GACCGA 1 cut(s) 586
TasI AATT 4 cut(s) 70, 397, 421, 502
TfiI GAWTC 8 cut(s) 79, 125, 140, 299, 408, 431, 532, 537
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 447
XapI RAATTY 2 cut(s) 70, 397
XmiI GTMKAC 2 cut(s) 192, 471
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.