Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

41065444 .. 41065910

Gene Structure 467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGACCCGGCAATCTCTTCCACCCACAGCGTCACTAGCCTCCCCAATCCTCCGGTATCAGATTAAACGTCGCCGCTCTCGGCTTTCCCTTCAGTTTCAGCGACTTGAGCTGCCGGAACCGCCTCCTAAGTCGCTCAAGGCTCGTCATCTAGTAAAGCGCAATGGTCACCGACGGCGAACTGAAATGGAGACCTCACTGACAATGACGACTGAATCGAGGCGCGAATCGTCGTCGTCTAATCTGGCATTCAATTTCGTCTACGAGGTGATGGTTTGGATTGGGTTTTCGAATGGCATGCACTTTGCTTTCAAGAGGGTGATTCAAATCGTAGCAGATGTGTTAGATGATGTAGAGAGAGAAAAGGTGCCTATGAGATTGGCTTTGGTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

15.17

Weight (kDa)

11.04

Isoelectric Point (pI)

75.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	222
AciI	CCGC	2 cut(s)	73, 119
AcuI	CTGAAG	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	250, 310, 323
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	109
AspLEI	GCGC	2 cut(s)	159, 222
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	158, 277, 328
AsuII	TTCGAA	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BcnI	CCSGG	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	35, 149
BisI	GCNGC	2 cut(s)	73, 110
BlsI	GCNGC	2 cut(s)	74, 111
Bme1390I	CCNGG	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	117, 366
BmrFI	CCNGG	1 cut(s)	7
Bpu14I	TTCGAA	1 cut(s)	287
BpuEI	CTTGAG	2 cut(s)	119, 125
BpuMI	CCSGG	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	323
BseJI	GATNNNNATC	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	364
BsiSI	CCGG	3 cut(s)	7, 52, 113
BsmAI	GTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	245
Bso31I	GGTCTC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	287
BspACI	CCGC	2 cut(s)	73, 119
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	117, 366
BspT104I	TTCGAA	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	126
BstEII	GGTNACC	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	2 cut(s)	159, 222
BstMAI	GTCTC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 106, 118
BstNSI	RCATGY	1 cut(s)	298
BstPI	GGTNACC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	5
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	296
CfoI	GCGC	2 cut(s)	159, 222
CseI	GACGC	1 cut(s)	18
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	5 cut(s)	38, 82, 109, 140, 380
CviKI_1	RGCY	5 cut(s)	38, 82, 109, 140, 380
DdeI	CTNAG	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	164
EcoO65I	GGTNACC	1 cut(s)	164
FaeI	CATG	1 cut(s)	298
FaiI	YATR	2 cut(s)	296, 371
FatI	CATG	1 cut(s)	294
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	73, 110
Fsp4HI	GCNGC	2 cut(s)	73, 110
FspBI	CTAG	2 cut(s)	35, 149
GlaI	GCGC	2 cut(s)	158, 221
GluI	GCNGC	2 cut(s)	73, 110
HapII	CCGG	3 cut(s)	7, 52, 113
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	2 cut(s)	159, 222
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	2 cut(s)	157, 220
HinP1I	GCGC	2 cut(s)	157, 220
HinfI	GANTC	3 cut(s)	212, 224, 319
HpaII	CCGG	3 cut(s)	7, 52, 113
HphI	GGTGA	3 cut(s)	158, 277, 328
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	1 cut(s)	310
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	4 cut(s)	72, 174, 232, 235
HpyAV	CCTTC	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 106, 118
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	2 cut(s)	157, 220
LpnPI	CCDG	4 cut(s)	20, 65, 126, 227
Lsp1109I	GCAGC	1 cut(s)	96
MaeI	CTAG	2 cut(s)	35, 149
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	2 cut(s)	30, 164
MbiI	CCGCTC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	8
MluCI	AATT	1 cut(s)	250
MnlI	CCTC	7 cut(s)	49, 59, 132, 202, 210, 256, 306
MseI	TTAA	1 cut(s)	63
MspI	CCGG	3 cut(s)	7, 52, 113
MspR9I	CCNGG	1 cut(s)	7
Mva1269I	GAATGC	1 cut(s)	245
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	35, 106, 118
NciI	CCSGG	1 cut(s)	7
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	117, 366
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	2 cut(s)	30, 164
NspI	RCATGY	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	212, 224, 319
PkrI	GCNGC	2 cut(s)	74, 111
PspEI	GGTNACC	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	117, 366
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	73, 110
ScrFI	CCNGG	1 cut(s)	7
SetI	ASST	5 cut(s)	70, 111, 194, 267, 366
SfuI	TTCGAA	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	104, 134
SmoI	CTYRAG	2 cut(s)	104, 134
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	2 cut(s)	73, 119
SspMI	CTAG	2 cut(s)	35, 149
StyD4I	CCNGG	1 cut(s)	5
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	215, 287
TasI	AATT	1 cut(s)	250
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	212, 224, 319
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	30, 164
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	2 cut(s)	30, 164
TspRI	CASTG	1 cut(s)	201
XceI	RCATGY	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	2 cut(s)	35, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.