Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Reverse (-)

12013912 .. 12014643

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011702

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCTAAAACGGACGCAAAGCTCCGATGGTTGCTCTGACGAAAATGAATGGCAGCCGCACAAGAAGATGAAGAACCTCAAGCTTTCGATCATCGAGCCCGGCGGCCAGGAGCTCAATATTGAAGCCGAATTGCTCTCCTCAAGCTGTATTCCAATATTTCGTAGTGTCAATGTCCAGAAGGCATCTGAATCGGAGAATGGCGGAGGCAGCGGTGAACGGCTGAGATCTGAAGCATCCGATGCTTTCGAATCAGCTCCACCACTCGACTCCCGGCCTCGGCATCGCCATCGTGGCCTTCATGTCTACTTGTCGGCGAGAAGTTCTACAACCTCTGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

114

Amino Acids

12.45

Weight (kDa)

6.42

Isoelectric Point (pI)

75.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	4 cut(s)	56, 102, 201, 210
AcoI	YGGCCR	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	5 cut(s)	21, 82, 112, 144, 254
AluI	AGCT	5 cut(s)	21, 82, 112, 144, 254
Alw21I	GWGCWC	1 cut(s)	114
AoxI	GGCC	3 cut(s)	103, 272, 292
ApeKI	GCWGC	2 cut(s)	52, 207
AsuC2I	CCSGG	2 cut(s)	99, 271
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	246
BanII	GRGCYC	2 cut(s)	99, 114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	64, 219
BccI	CCATC	2 cut(s)	20, 294
BceAI	ACGGC	1 cut(s)	233
BcgI	CGANNNNNNTGC	4 cut(s)	171, 205, 269, 303
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	2 cut(s)	99, 271
BglI	GCCNNNNNGGC	1 cut(s)	291
BglII	AGATCT	1 cut(s)	224
BisI	GCNGC	4 cut(s)	53, 56, 103, 208
BlsI	GCNGC	4 cut(s)	54, 57, 104, 209
Bme1390I	CCNGG	3 cut(s)	99, 107, 271
BmrFI	CCNGG	3 cut(s)	99, 107, 271
BmsI	GCATC	4 cut(s)	191, 229, 242, 289
Bpu14I	TTCGAA	1 cut(s)	246
BpuEI	CTTGAG	2 cut(s)	62, 124
BpuMI	CCSGG	2 cut(s)	99, 271
BsaJI	CCNNGG	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	64, 219
BshFI	GGCC	3 cut(s)	105, 274, 294
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	99, 271
BslI	CCNNNNNNNGG	1 cut(s)	276
BsnI	GGCC	3 cut(s)	105, 274, 294
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	99, 114
Bsp143I	GATC	2 cut(s)	87, 224
BspACI	CCGC	4 cut(s)	56, 102, 201, 210
BspANI	GGCC	3 cut(s)	105, 274, 294
BspCNI	CTCAG	1 cut(s)	213
BspT104I	TTCGAA	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	2 cut(s)	87, 224
Bst2UI	CCWGG	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	233
BstKTI	GATC	2 cut(s)	90, 227
BstMBI	GATC	2 cut(s)	87, 224
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 239, 291
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	3 cut(s)	97, 105, 269
BstV1I	GCAGC	2 cut(s)	64, 219
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BsuRI	GGCC	3 cut(s)	105, 274, 294
BtgZI	GCGATG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	233
CseI	GACGC	1 cut(s)	22
CspCI	CAANNNNNGTGG	1 cut(s)	315
CviAII	CATG	1 cut(s)	299
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	2 cut(s)	89, 226
DpnII	GATC	2 cut(s)	87, 224
EaeI	YGGCCR	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	99, 114
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	99, 114
FaeI	CATG	1 cut(s)	302
FaiI	YATR	1 cut(s)	300
FatI	CATG	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	4 cut(s)	53, 56, 103, 208
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	2 cut(s)	99, 114
Fsp4HI	GCNGC	4 cut(s)	53, 56, 103, 208
GluI	GCNGC	4 cut(s)	53, 56, 103, 208
HaeIII	GGCC	3 cut(s)	105, 274, 294
HapII	CCGG	2 cut(s)	99, 271
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	302
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	188, 248, 266
HpaII	CCGG	2 cut(s)	99, 271
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	215, 304
Hpy188I	TCNGA	6 cut(s)	25, 37, 187, 193, 229, 238
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	2 cut(s)	215, 304
HpyAV	CCTTC	2 cut(s)	172, 305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 239, 291
HpyF3I	CTNAG	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	87, 224
LmnI	GCTCC	3 cut(s)	26, 109, 259
LpnPI	CCDG	5 cut(s)	92, 112, 119, 188, 284
Lsp1109I	GCAGC	2 cut(s)	64, 219
LweI	GCATC	4 cut(s)	191, 229, 242, 289
MalI	GATC	2 cut(s)	89, 226
MboI	GATC	2 cut(s)	87, 224
MboII	GAAGA	2 cut(s)	76, 82
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	99, 114
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	86, 148, 197, 285, 340
MseI	TTAA	1 cut(s)	340
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	2 cut(s)	99, 271
MspR9I	CCNGG	3 cut(s)	99, 107, 271
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	207, 239, 291
NciI	CCSGG	2 cut(s)	99, 271
NdeII	GATC	2 cut(s)	87, 224
NlaIII	CATG	1 cut(s)	302
NmeAIII	GCCGAG	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	188, 248
PkrI	GCNGC	4 cut(s)	54, 57, 104, 209
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	340
SatI	GCNGC	4 cut(s)	53, 56, 103, 208
Sau3AI	GATC	2 cut(s)	87, 224
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	3 cut(s)	99, 107, 271
SduI	GDGCHC	2 cut(s)	99, 114
SetI	ASST	7 cut(s)	23, 78, 84, 114, 146, 256, 332
SfaNI	GCATC	4 cut(s)	191, 229, 242, 289
SfuI	TTCGAA	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	77, 139
SmoI	CTYRAG	2 cut(s)	77, 139
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	4 cut(s)	56, 102, 201, 210
SspI	AATATT	2 cut(s)	118, 156
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	97, 105, 269
TaqI	TCGA	4 cut(s)	86, 93, 246, 264
TasI	AATT	1 cut(s)	128
TauI	GCSGC	2 cut(s)	58, 105
TfiI	GAWTC	2 cut(s)	188, 248
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TseI	GCWGC	2 cut(s)	52, 207
TspDTI	ATGAA	3 cut(s)	60, 83, 287
TspGWI	ACGGA	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.