Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025855.1

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

8569 .. 10888

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025855.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgagcaaattttctggattccggcataatcatttgagaagcgttcagattcgttgcttccacggtagattgtctgagatagagttggccattttaattctgaaaatttccaccaagctggagaagatggtaatcgatccacttggaaaattttacaatggtgaattggtgatgggagatgggtggttgagaacccttattatcattcggatgaggatggcacagtcccgcagttgcaaagctctgatcattgctccgacgaaaaatgaatggcggccacacaagaagatgaagaacctcaagcttctgatcattgagcccgacggccaggagctcaaaattgaatatgagtcgctatcctcgatccgtactgcaatatttctaagtctcaatgtctggaaggtgtctgaatcggagaaccacagcgacaacggtgagctgctgagatctgaagcatccaatactttcaaaccagctccgccacacgacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

164

Amino Acids

18.91

Weight (kDa)

9.58

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	229, 274, 479
AclWI	GGATC	2 cut(s)	131, 358
AcoI	YGGCCR	3 cut(s)	87, 275, 325
AcsI	RAATTY	3 cut(s)	8, 105, 149
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	344, 469
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	6 cut(s)	118, 242, 304, 334, 439, 476
AluI	AGCT	6 cut(s)	118, 242, 304, 334, 439, 476
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	2 cut(s)	131, 358
AoxI	GGCC	3 cut(s)	87, 275, 325
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	3 cut(s)	8, 105, 149
AsuHPI	GGTGA	3 cut(s)	173, 181, 446
BalI	TGGCCA	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	321, 336
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	4 cut(s)	121, 166, 173, 211
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	2 cut(s)	246, 309
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	1 cut(s)	493
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	2 cut(s)	275, 440
BlsI	GCNGC	2 cut(s)	276, 441
Bme1390I	CCNGG	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	3 cut(s)	216, 222, 455
BseJI	GATNNNNATC	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	66, 434
BseXI	GCAGC	1 cut(s)	426
BshFI	GGCC	3 cut(s)	89, 277, 327
BshVI	ATCGAT	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	3 cut(s)	89, 277, 327
Bsp1286I	GDGCHC	2 cut(s)	321, 336
Bsp143I	GATC	5 cut(s)	136, 246, 309, 363, 446
BspACI	CCGC	3 cut(s)	229, 274, 479
BspANI	GGCC	3 cut(s)	89, 277, 327
BspCNI	CTCAG	2 cut(s)	67, 435
BspDI	ATCGAT	1 cut(s)	135
BspPI	GGATC	2 cut(s)	131, 358
BsrDI	GCAATG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	5 cut(s)	136, 246, 309, 363, 446
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	65, 225, 434
BstDEI	CTNAG	3 cut(s)	75, 383, 443
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	216, 222, 455
BstKTI	GATC	5 cut(s)	139, 249, 312, 366, 449
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	5 cut(s)	136, 246, 309, 363, 446
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	446
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	89, 277, 327
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	216, 222, 455
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	369
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	3 cut(s)	75, 383, 443
DpnI	GATC	5 cut(s)	138, 248, 311, 365, 448
DpnII	GATC	5 cut(s)	136, 246, 309, 363, 446
EaeI	YGGCCR	3 cut(s)	87, 275, 325
EciI	GGCGGA	1 cut(s)	468
Ecl136II	GAGCTC	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	321, 336
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	327
EcoT38I	GRGCYC	2 cut(s)	321, 336
FaiI	YATR	2 cut(s)	27, 348
FaqI	GGGAC	1 cut(s)	211
FauI	CCCGC	1 cut(s)	236
FbaI	TGATCA	2 cut(s)	246, 309
Fnu4HI	GCNGC	2 cut(s)	275, 440
FokI	GGATG	3 cut(s)	223, 229, 442
FriOI	GRGCYC	2 cut(s)	321, 336
Fsp4HI	GCNGC	2 cut(s)	275, 440
FspBI	CTAG	1 cut(s)	493
GluI	GCNGC	2 cut(s)	275, 440
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	3 cut(s)	89, 277, 327
HapII	CCGG	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	4 cut(s)	18, 49, 350, 410
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	3 cut(s)	173, 181, 446
Hpy188III	TCNNGA	2 cut(s)	15, 397
Hpy99I	CGWCG	2 cut(s)	262, 326
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	3 cut(s)	65, 225, 434
HpyCH4V	TGCA	2 cut(s)	237, 374
HpyF3I	CTNAG	3 cut(s)	75, 383, 443
Ksp22I	TGATCA	2 cut(s)	246, 309
Kzo9I	GATC	5 cut(s)	136, 246, 309, 363, 446
LmnI	GCTCC	3 cut(s)	259, 331, 481
LpnPI	CCDG	6 cut(s)	35, 104, 314, 341, 382, 486
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	1 cut(s)	464
MaeI	CTAG	1 cut(s)	493
MalI	GATC	5 cut(s)	138, 248, 311, 365, 448
MboI	GATC	5 cut(s)	136, 246, 309, 363, 446
MboII	GAAGA	3 cut(s)	136, 298, 304
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	2 cut(s)	321, 336
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	6 cut(s)	8, 96, 105, 149, 164, 339
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	3 cut(s)	207, 308, 370
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
NdeII	GATC	5 cut(s)	136, 246, 309, 363, 446
PcsI	WCGNNNNNNNCGW	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	18, 49, 410
PkrI	GCNGC	2 cut(s)	276, 441
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	2 cut(s)	275, 440
Sau3AI	GATC	5 cut(s)	136, 246, 309, 363, 446
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	2 cut(s)	321, 336
SetI	ASST	8 cut(s)	120, 244, 300, 306, 336, 405, 441, 478
SfaNI	GCATC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	6 cut(s)	8, 96, 105, 149, 164, 339
SsiI	CCGC	3 cut(s)	229, 274, 479
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	1 cut(s)	493
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	3 cut(s)	65, 225, 434
TaqI	TCGA	2 cut(s)	135, 362
TasI	AATT	6 cut(s)	8, 96, 105, 149, 164, 339
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	3 cut(s)	18, 49, 410
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseI	GCWGC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	282, 305
TspGWI	ACGGA	1 cut(s)	356
XapI	RAATTY	3 cut(s)	8, 105, 149
XspI	CTAG	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.