Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Reverse (-)

65765997 .. 65766580

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTGCTCGTTGATCACCTCCTCCGATTGTATTCCCATCACCGTTATCGGCACCTCATCCAGTGAAGAACTAAAGCGAGTTGATGCAATGATGCTAATGTACGCCTATGATCAGCCATTGACGCTTACTCGTATCTCTAGCTTCTGGCTCCCTGAGCTTCGTCGGTTGGAGTTGGATTTGAGAGACGAGCATGATTCGATGAGTATGGAGCAGGTGTTGACACCAATCATGCAGCGGTATAGGGAAATTGAGACATGCATCGAGTGTTCTGCTGCTACTTTTAGATTTTGTATTCAGATTTTGTGCAAGAGCTTGAAAACTAAACATCAATTTGCTTGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04137 ko04214 map04137 map04214

Pfam Domains

Protein Families

EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

114

Amino Acids

13.21

Weight (kDa)

5.32

Isoelectric Point (pI)

62.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	50
AciI	CCGC	1 cut(s)	235
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	316
AluBI	AGCT	3 cut(s)	141, 157, 312
AluI	AGCT	3 cut(s)	141, 157, 312
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	177, 245
ApeKI	GCWGC	2 cut(s)	232, 272
AsuHPI	GGTGA	2 cut(s)	7, 31
BanI	GGYRCC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	244, 259
BccI	CCATC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BclI	TGATCA	2 cut(s)	12, 109
BcoDI	GTCTC	2 cut(s)	177, 245
BfaI	CTAG	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	233, 273
BlsI	GCNGC	2 cut(s)	234, 274
BmiI	GGNNCC	2 cut(s)	52, 149
BmsI	GCATC	3 cut(s)	73, 81, 267
Bpu10I	CCTNAGC	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	244, 259
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	8
BsmAI	GTCTC	2 cut(s)	177, 245
BsmBI	CGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	12, 109
BspACI	CCGC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	52, 149
BspMI	ACCTGC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	12, 109
Bst4CI	ACNGT	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	2 cut(s)	15, 112
BstMAI	GTCTC	2 cut(s)	177, 245
BstMBI	GATC	2 cut(s)	12, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 154
BstNSI	RCATGY	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	244, 259
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	202
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	191, 229, 255
CviJI	RGCY	5 cut(s)	115, 141, 148, 157, 312
CviKI_1	RGCY	5 cut(s)	115, 141, 148, 157, 312
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	14, 111
DpnII	GATC	2 cut(s)	12, 109
EcoT22I	ATGCAT	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	3 cut(s)	194, 232, 258
FaiI	YATR	6 cut(s)	108, 192, 206, 230, 240, 256
FatI	CATG	3 cut(s)	190, 228, 254
FbaI	TGATCA	2 cut(s)	12, 109
Fnu4HI	GCNGC	2 cut(s)	233, 273
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	233, 273
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	2 cut(s)	233, 273
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	194, 232, 258
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	2 cut(s)	7, 31
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	2 cut(s)	25, 297
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	86, 232, 258, 306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 154
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	194, 232, 258
Ksp22I	TGATCA	2 cut(s)	12, 109
Kzo9I	GATC	2 cut(s)	12, 109
LmnI	GCTCC	2 cut(s)	153, 208
LpnPI	CCDG	4 cut(s)	73, 130, 165, 197
Lsp1109I	GCAGC	2 cut(s)	244, 259
LweI	GCATC	3 cut(s)	73, 81, 267
MaeI	CTAG	1 cut(s)	138
MalI	GATC	2 cut(s)	14, 111
MboI	GATC	2 cut(s)	12, 109
MboII	GAAGA	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	246, 329
MmeI	TCCRAC	2 cut(s)	147, 153
MnlI	CCTC	3 cut(s)	28, 31, 64
Mph1103I	ATGCAT	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	121, 154
NdeII	GATC	2 cut(s)	12, 109
NlaIII	CATG	3 cut(s)	194, 232, 258
NlaIV	GGNNCC	2 cut(s)	52, 149
NsiI	ATGCAT	1 cut(s)	260
NspI	RCATGY	1 cut(s)	258
PaqCI	CACCTGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	234, 274
PspN4I	GGNNCC	2 cut(s)	52, 149
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	2 cut(s)	233, 273
Sau3AI	GATC	2 cut(s)	12, 109
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	20, 56, 143, 159, 216, 314
SfaNI	GCATC	3 cut(s)	73, 81, 267
Sse9I	AATT	2 cut(s)	246, 329
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	197, 261
TasI	AATT	2 cut(s)	246, 329
TfiI	GAWTC	1 cut(s)	194
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	2 cut(s)	232, 272
TspRI	CASTG	1 cut(s)	67
XceI	RCATGY	1 cut(s)	258
XspI	CTAG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.