Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Reverse (-)

86594639 .. 86596684

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG646500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGTAATCGATCCGCTTGGAAAATTCTACAATGGTGATGGGAGATGGGTGGTTGAGAACCCTTATTATCATTCGGATGAGGATGGGCACAGTCCCGCAGACGAAAATGAATGGCGGTCGCACAAGAAGATGAAGAAGCTCAAGCTTCCGATCATTGAGCCCGGCGGCCAGGAGCTCAAAATTGAATCCGAGTCGCTCTCCTCGATCCGTACTACAATATTTCGTAGTCTCAATGTCTGGAAGGCTTCTGAATCGGAGAACCGCAGCGACAACGGCGAGCGGCTGAGATCTGAAGCATCTAATACTTTCGAACCAAGTCCGCCACACAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

111

Amino Acids

12.77

Weight (kDa)

5.56

Isoelectric Point (pI)

77.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	280
AciI	CCGC	7 cut(s)	14, 96, 115, 165, 262, 280, 320
AclWI	GGATC	2 cut(s)	5, 199
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	3 cut(s)	139, 145, 175
AluI	AGCT	3 cut(s)	139, 145, 175
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	2 cut(s)	5, 199
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	90
BanII	GRGCYC	2 cut(s)	162, 177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	3 cut(s)	32, 39, 77
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	334
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	3 cut(s)	166, 265, 281
BlsI	GCNGC	3 cut(s)	167, 266, 282
Bme1390I	CCNGG	2 cut(s)	162, 170
BmrFI	CCNGG	2 cut(s)	162, 170
BmsI	GCATC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
Bpu14I	TTCGAA	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	170
BseCI	ATCGAT	1 cut(s)	9
BseGI	GGATG	2 cut(s)	82, 88
BseMII	CTCAG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	168
BshVI	ATCGAT	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	309
Bsp1286I	GDGCHC	3 cut(s)	90, 162, 177
Bsp143I	GATC	4 cut(s)	10, 150, 204, 287
BspACI	CCGC	7 cut(s)	14, 96, 115, 165, 262, 280, 320
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	276
BspDI	ATCGAT	1 cut(s)	9
BspPI	GGATC	2 cut(s)	5, 199
BspT104I	TTCGAA	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	280
BssMI	GATC	4 cut(s)	10, 150, 204, 287
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	82, 88
BstKTI	GATC	4 cut(s)	13, 153, 207, 290
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	4 cut(s)	10, 150, 204, 287
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	160, 168
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	168
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	82, 88
Cac8I	GCNNGC	1 cut(s)	278
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	210
CviJI	RGCY	7 cut(s)	139, 145, 160, 168, 175, 245, 283
CviKI_1	RGCY	7 cut(s)	139, 145, 160, 168, 175, 245, 283
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	4 cut(s)	12, 152, 206, 289
DpnII	GATC	4 cut(s)	10, 150, 204, 287
EaeI	YGGCCR	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	2 cut(s)	162, 177
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	168
EcoT38I	GRGCYC	2 cut(s)	162, 177
FaqI	GGGAC	1 cut(s)	78
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	166, 265, 281
FokI	GGATG	2 cut(s)	89, 95
FriOI	GRGCYC	2 cut(s)	162, 177
Fsp4HI	GCNGC	3 cut(s)	166, 265, 281
FspBI	CTAG	1 cut(s)	334
GluI	GCNGC	3 cut(s)	166, 265, 281
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	3 cut(s)	185, 191, 251
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	6 cut(s)	76, 150, 190, 250, 256, 292
Hpy188III	TCNNGA	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	1 cut(s)	284
Kzo9I	GATC	4 cut(s)	10, 150, 204, 287
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	4 cut(s)	155, 175, 182, 223
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	334
MalI	GATC	4 cut(s)	12, 152, 206, 289
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	4 cut(s)	10, 150, 204, 287
MboII	GAAGA	2 cut(s)	139, 145
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	3 cut(s)	90, 162, 177
MluCI	AATT	2 cut(s)	23, 180
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	2 cut(s)	73, 211
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	162, 170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	273
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	10, 150, 204, 287
NspV	TTCGAA	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	185, 251
PkrI	GCNGC	3 cut(s)	167, 266, 282
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	177
SatI	GCNGC	3 cut(s)	166, 265, 281
Sau3AI	GATC	4 cut(s)	10, 150, 204, 287
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	162, 170
SduI	GDGCHC	3 cut(s)	90, 162, 177
SetI	ASST	3 cut(s)	141, 147, 177
SfaNI	GCATC	1 cut(s)	305
SfuI	TTCGAA	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	23, 180
SsiI	CCGC	7 cut(s)	14, 96, 115, 165, 262, 280, 320
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	334
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	160, 168
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	3 cut(s)	9, 203, 309
TasI	AATT	2 cut(s)	23, 180
TauI	GCSGC	2 cut(s)	168, 283
TfiI	GAWTC	2 cut(s)	185, 251
TseI	GCWGC	1 cut(s)	264
TspDTI	ATGAA	2 cut(s)	123, 146
TspGWI	ACGGA	1 cut(s)	197
XapI	RAATTY	1 cut(s)	23
XspI	CTAG	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.