Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

17611800 .. 17612623

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCGTTAATGCAAATGGAGGAAGAAGAGAGGGTGCCGCACAAGAAGATGAAGAACCTCAAGCTTCTGATTATTAAGCCCGGCGACCAGGATTTCAATATCGAAGCCGAATCGCTCTCCTCAAGCCGTACTCCAATATTTCGCAGTGTCAATGTTTGGAAGGCATCTGAATCAGAGAATGGCGGCGGCAGCGGTGAGCAGCTGAGATTTGAAGCATCCGATGCTTTCGAATCAGCTCCGCCACTCTACTCTCGGCCTCGGCATCACTGTCGTGGCCTTCGTGTCTACTTGTCGGCGAGCAGTTCTACAACCTCAGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

108

Amino Acids

12.0

Weight (kDa)

6.3

Isoelectric Point (pI)

68.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	5 cut(s)	38, 183, 186, 192, 239
AfaI	GTAC	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	97, 212
AjnI	CCWGG	1 cut(s)	87
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	3 cut(s)	64, 202, 236
AluI	AGCT	3 cut(s)	64, 202, 236
AoxI	GGCC	2 cut(s)	254, 274
ApeKI	GCWGC	2 cut(s)	189, 199
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	206
AsuII	TTCGAA	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	201, 211
BceAI	ACGGC	1 cut(s)	111
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	81
BisI	GCNGC	5 cut(s)	38, 184, 187, 190, 200
BlsI	GCNGC	5 cut(s)	39, 185, 188, 191, 201
Bme1390I	CCNGG	2 cut(s)	81, 89
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	81, 89
BmsI	GCATC	4 cut(s)	173, 211, 224, 271
Bpu14I	TTCGAA	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	44, 106
BpuMI	CCSGG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	201, 211
BshFI	GGCC	2 cut(s)	256, 276
BshNI	GGYRCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	81
BsnI	GGCC	2 cut(s)	256, 276
Bsp119I	TTCGAA	1 cut(s)	228
BspACI	CCGC	5 cut(s)	38, 183, 186, 192, 239
BspANI	GGCC	2 cut(s)	256, 276
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	2 cut(s)	203, 313
BstF5I	GGATG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 221
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	79, 87
BstV1I	GCAGC	2 cut(s)	201, 211
BsuRI	GGCC	2 cut(s)	256, 276
BtsCI	GGATG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	3 cut(s)	151, 265, 321
Cac8I	GCNNGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	129
CspCI	CAANNNNNGTGG	1 cut(s)	297
CviJI	RGCY	8 cut(s)	64, 79, 107, 126, 202, 236, 256, 276
CviKI_1	RGCY	8 cut(s)	64, 79, 107, 126, 202, 236, 256, 276
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	2 cut(s)	203, 313
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	38, 184, 187, 190, 200
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	5 cut(s)	38, 184, 187, 190, 200
GluI	GCNGC	5 cut(s)	38, 184, 187, 190, 200
HaeIII	GGCC	2 cut(s)	256, 276
HapII	CCGG	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	110, 170, 230
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	4 cut(s)	69, 169, 175, 220
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	154, 287
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 221
HpyF3I	CTNAG	2 cut(s)	203, 313
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	3 cut(s)	74, 94, 101
Lsp1109I	GCAGC	2 cut(s)	201, 211
LweI	GCATC	4 cut(s)	173, 211, 224, 271
MboII	GAAGA	4 cut(s)	35, 38, 58, 64
MnlI	CCTC	6 cut(s)	13, 24, 68, 130, 267, 322
MseI	TTAA	3 cut(s)	8, 75, 322
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	2 cut(s)	192, 202
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	2 cut(s)	81, 89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	189, 221
NciI	CCSGG	1 cut(s)	81
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	2 cut(s)	232, 238
NspV	TTCGAA	1 cut(s)	228
OliI	CACNNNNGTG	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	110, 170, 230
PkrI	GCNGC	5 cut(s)	39, 185, 188, 191, 201
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	8, 75, 322
SatI	GCNGC	5 cut(s)	38, 184, 187, 190, 200
ScrFI	CCNGG	2 cut(s)	81, 89
SetI	ASST	5 cut(s)	60, 66, 204, 238, 314
SfaNI	GCATC	4 cut(s)	173, 211, 224, 271
SfuI	TTCGAA	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	59, 121
SmoI	CTYRAG	2 cut(s)	59, 121
SsiI	CCGC	5 cut(s)	38, 183, 186, 192, 239
SspI	AATATT	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	79, 87
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	102, 228
TauI	GCSGC	3 cut(s)	40, 186, 189
TfiI	GAWTC	3 cut(s)	110, 170, 230
Tru1I	TTAA	3 cut(s)	8, 75, 322
Tru9I	TTAA	3 cut(s)	8, 75, 322
TscAI	CASTG	3 cut(s)	151, 272, 321
TseI	GCWGC	2 cut(s)	189, 199
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	3 cut(s)	151, 272, 321
XmiI	GTMKAC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.