Rh6AG112200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
16673784 .. 16678987
5204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG112200.1

Sequence Viewer

Length: 234 bp
ATGATGCTGCAATTGGCTGTCAGTCTGAGATTATTTGCATCTCGTGTGCAGGAAATTCGTGTCCCGTTACAGGCACTGAACAAGAATGGAAGCTTGCGCAGAGCACAATGGAAACTGCTTCCAGTGGATTGTATTCTGCAACGAACGAACTTAGTATTGCATCTCTCAAAGCAAAGTCAGCTTCAGGAACATGCCAAGAGGGAATACAAGATCAGAAAAAGGAACAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

9.07

Weight (kDa)

11.52

Isoelectric Point (pI)

77.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 98
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 93, 181
AluI AGCT 2 cut(s) 93, 181
Alw21I GWGCWC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 7
ApoI RAATTY 1 cut(s) 54
AspLEI GCGC 1 cut(s) 99
BauI CACGAG 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
BmsI GCATC 2 cut(s) 47, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 122
BsgI GTGCAG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 106
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 122
BssMI GATC 1 cut(s) 210
BssSI CACGAG 1 cut(s) 42
Bst2BI CACGAG 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 26, 151
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 74, 129
Cac8I GCNNGC 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 76
CfoI GCGC 1 cut(s) 99
CviAII CATG 2 cut(s) 191, 231
CviJI RGCY 3 cut(s) 17, 93, 181
CviKI_1 RGCY 3 cut(s) 17, 93, 181
DdeI CTNAG 2 cut(s) 26, 151
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 167
FaeI CATG 2 cut(s) 194, 234
FaiI YATR 2 cut(s) 192, 232
FaqI GGGAC 1 cut(s) 47
FatI CATG 2 cut(s) 190, 230
Fnu4HI GCNGC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 8
FspI TGCGCA 1 cut(s) 98
GlaI GCGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 8
HhaI GCGC 1 cut(s) 99
Hin1II CATG 2 cut(s) 194, 234
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 27, 215
Hpy188III TCNNGA 1 cut(s) 185
HpyCH4V TGCA 5 cut(s) 10, 38, 49, 139, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 2 cut(s) 26, 151
Hsp92II CATG 2 cut(s) 194, 234
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 210
LpnPI CCDG 4 cut(s) 35, 56, 135, 170
LweI GCATC 2 cut(s) 47, 169
MaeIII GTNAC 1 cut(s) 66
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MfeI CAATTG 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 2 cut(s) 11, 54
MnlI CCTC 1 cut(s) 192
MunI CAATTG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 1 cut(s) 210
NlaIII CATG 2 cut(s) 194, 234
NsbI TGCGCA 1 cut(s) 98
NspI RCATGY 1 cut(s) 194
PkrI GCNGC 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 76
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 210
SduI GDGCHC 1 cut(s) 106
SetI ASST 2 cut(s) 95, 183
SfaNI GCATC 2 cut(s) 47, 169
Sse9I AATT 2 cut(s) 11, 54
TasI AATT 2 cut(s) 11, 54
TscAI CASTG 2 cut(s) 81, 129
TseI GCWGC 1 cut(s) 7
TspRI CASTG 2 cut(s) 81, 129
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.