pycom13g13910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001308
Physical Location & Seq
Forward (+)
9891629 .. 9892240
612 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g13910.1

Sequence Viewer

Length: 612 bp
ATGGATATCTCTCTTCTATACGACACCGTTACAGTCGCAACCACCGCCCAGGGCCTAGGGTTCGCCAAGTTCCTAATTCGTCACCATGACCTCACCTCCAACAATCAAATCTCCATCACCTATACTCATGCCGATCAGCCTTCGCCTTCCAATGGAGTCCCCCAGATCTCCGCCGTTATTTTTTCCTTCGACGCTGTCGCTCCGCCGCGTGCCCGGCCCAACTCTACCAGAACCGCAACCCGAACCCTCCTCCGCAAAAAACGCCGCACCAGACGGAGACCTTCGAGCGGCGACGATTCTAACGACGGAGGCGAGGAAGACGGCGGGTTTTTCGGCGGGGATGGTCCGTTTTTCAACGGAGGATGGGGAGGCAGTGGAGGTGGCGGCGGCGGGGGTTGGAATTTCGATAGGTTTGGAGGGAATAGTTGGGATGAGTCATCGTCGTCTTCGCCGTCCGATCCGGCGTTCGATTTCGTCTACGAGGTGATGTGTTGGATTGCGCTTTCGAATTGCGTGCACTTCGCATTCAAGAGGGTGATTCGAATATTGGCGGATGGGTTGGGAGACGCCCACAGGGAGAAGGTGCCCATGAGATTGACTTCGGTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

21.91

Weight (kDa)

6.96

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 583
AccBSI CCGCTC 1 cut(s) 288
AccI GTMKAC 1 cut(s) 477
AccII CGCG 1 cut(s) 208
AclWI GGATC 1 cut(s) 452
AcsI RAATTY 1 cut(s) 400
AcyI GRCGYC 1 cut(s) 567
AfiI CCNNNNNNNGG 2 cut(s) 152, 287
AgsI TTSAA 2 cut(s) 355, 529
AjnI CCWGG 1 cut(s) 48
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 2 cut(s) 271, 558
Alw44I GTGCAC 1 cut(s) 515
AlwI GGATC 1 cut(s) 452
AoxI GGCC 2 cut(s) 52, 215
ApaLI GTGCAC 1 cut(s) 515
ApoI RAATTY 1 cut(s) 400
AspA2I CCTAGG 1 cut(s) 55
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 3 cut(s) 52, 216, 344
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 5 cut(s) 74, 85, 109, 496, 547
AsuII TTCGAA 2 cut(s) 506, 541
AvaII GGWCC 1 cut(s) 344
AvrII CCTAGG 1 cut(s) 55
BaeGI GKGCMC 3 cut(s) 214, 519, 588
BanI GGYRCC 1 cut(s) 583
BbsI GAAGAC 2 cut(s) 324, 438
Bbv12I GWGCWC 1 cut(s) 519
BccI CCATC 4 cut(s) 122, 335, 357, 548
BceAI ACGGC 3 cut(s) 158, 337, 436
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciT130I CCWGG 1 cut(s) 50
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 271, 558
BfaI CTAG 1 cut(s) 56
BglII AGATCT 1 cut(s) 165
BisI GCNGC 5 cut(s) 206, 265, 289, 385, 388
BlnI CCTAGG 1 cut(s) 55
BlsI GCNGC 5 cut(s) 207, 266, 290, 386, 389
Bme1390I CCNGG 2 cut(s) 50, 214
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 3 cut(s) 52, 216, 344
BmiI GGNNCC 1 cut(s) 585
BmrFI CCNGG 2 cut(s) 50, 214
BoxI GACNNNNGTC 1 cut(s) 602
BpiI GAAGAC 2 cut(s) 324, 438
Bpu14I TTCGAA 2 cut(s) 506, 541
BpuMI CCSGG 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 3 cut(s) 48, 49, 55
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 287
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 3 cut(s) 48, 49, 55
BseGI GGATG 4 cut(s) 346, 368, 436, 559
BseLI CCNNNNNNNGG 2 cut(s) 152, 287
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 3 cut(s) 214, 519, 588
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 2 cut(s) 54, 217
BshNI GGYRCC 1 cut(s) 583
BsiHKAI GWGCWC 1 cut(s) 519
BsiSI CCGG 2 cut(s) 214, 461
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 152, 287
BsmAI GTCTC 2 cut(s) 271, 558
BsmBI CGTCTC 1 cut(s) 558
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 2 cut(s) 54, 217
Bso31I GGTCTC 1 cut(s) 271
Bsp119I TTCGAA 2 cut(s) 506, 541
Bsp1286I GDGCHC 3 cut(s) 214, 519, 588
Bsp143I GATC 3 cut(s) 133, 165, 457
BspANI GGCC 2 cut(s) 54, 217
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 585
BspPI GGATC 1 cut(s) 452
BspT104I TTCGAA 2 cut(s) 506, 541
BspT107I GGYRCC 1 cut(s) 583
BspTNI GGTCTC 1 cut(s) 271
BsrBI CCGCTC 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 48, 49, 55
BssMI GATC 3 cut(s) 133, 165, 457
BssNI GRCGYC 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 28, 34
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 567
BstBI TTCGAA 2 cut(s) 506, 541
BstC8I GCNNGC 2 cut(s) 210, 515
BstF5I GGATG 4 cut(s) 346, 368, 436, 559
BstFNI CGCG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 3 cut(s) 136, 168, 460
BstMAI GTCTC 2 cut(s) 271, 558
BstMBI GATC 3 cut(s) 133, 165, 457
BstMWI GCNNNNNNNGC 3 cut(s) 44, 214, 261
BstNI CCWGG 1 cut(s) 50
BstPAI GACNNNNGTC 1 cut(s) 602
BstSCI CCNGG 2 cut(s) 48, 212
BstSLI GKGCMC 3 cut(s) 214, 519, 588
BstUI CGCG 1 cut(s) 208
BstV2I GAAGAC 2 cut(s) 324, 438
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 2 cut(s) 54, 217
BtsCI GGATG 4 cut(s) 346, 368, 436, 559
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 2 cut(s) 210, 515
CfoI GCGC 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 52, 216, 344
CseI GACGC 2 cut(s) 200, 575
CviAII CATG 3 cut(s) 86, 128, 589
CviJI RGCY 3 cut(s) 54, 139, 217
CviKI_1 RGCY 3 cut(s) 54, 139, 217
DpnI GATC 3 cut(s) 135, 167, 459
DpnII GATC 3 cut(s) 133, 165, 457
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EciI GGCGGA 3 cut(s) 160, 192, 566
Eco130I CCWWGG 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 271
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 3 cut(s) 89, 131, 592
FaiI YATR 5 cut(s) 19, 87, 123, 129, 590
FaqI GGGAC 1 cut(s) 143
FatI CATG 3 cut(s) 85, 127, 588
FauI CCCGC 3 cut(s) 317, 329, 383
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 5 cut(s) 206, 265, 289, 385, 388
FokI GGATG 4 cut(s) 353, 375, 443, 566
Fsp4HI GCNGC 5 cut(s) 206, 265, 289, 385, 388
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 501
GluI GCNGC 5 cut(s) 206, 265, 289, 385, 388
HaeIII GGCC 2 cut(s) 54, 217
HapII CCGG 2 cut(s) 214, 461
HgaI GACGC 2 cut(s) 200, 575
HhaI GCGC 1 cut(s) 502
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 3 cut(s) 89, 131, 592
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HinfI GANTC 4 cut(s) 156, 296, 434, 538
HpaII CCGG 2 cut(s) 214, 461
HphI GGTGA 5 cut(s) 74, 85, 109, 496, 547
Hpy166II GTNNAC 2 cut(s) 478, 517
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 1 cut(s) 529
Hpy8I GTNNAC 2 cut(s) 478, 517
Hpy99I CGWCG 4 cut(s) 194, 296, 308, 445
HpyAV CCTTC 5 cut(s) 150, 156, 196, 291, 574
HpyCH4III ACNGT 2 cut(s) 28, 34
HpyCH4V TGCA 1 cut(s) 517
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 214, 261
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 3 cut(s) 89, 131, 592
HspAI GCGC 1 cut(s) 500
Kzo9I GATC 3 cut(s) 133, 165, 457
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 8 cut(s) 35, 62, 176, 227, 241, 283, 474, 559
MaeI CTAG 1 cut(s) 56
MaeIII GTNAC 2 cut(s) 28, 80
MalI GATC 3 cut(s) 135, 167, 459
MbiI CCGCTC 1 cut(s) 288
MboI GATC 3 cut(s) 133, 165, 457
MboII GAAGA 3 cut(s) 5, 329, 438
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 3 cut(s) 214, 519, 588
MluCI AATT 3 cut(s) 75, 400, 508
MlyI GAGTC 2 cut(s) 165, 443
MmeI TCCRAC 3 cut(s) 123, 377, 473
MspI CCGG 2 cut(s) 214, 461
MspR9I CCNGG 2 cut(s) 50, 214
Mva1269I GAATGC 1 cut(s) 524
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 3 cut(s) 44, 214, 261
NciI CCSGG 1 cut(s) 214
NdeII GATC 3 cut(s) 133, 165, 457
NlaIII CATG 3 cut(s) 89, 131, 592
NlaIV GGNNCC 1 cut(s) 585
NmuCI GTSAC 1 cut(s) 80
NspV TTCGAA 2 cut(s) 506, 541
PasI CCCWGGG 1 cut(s) 49
PcsI WCGNNNNNNNCGW 3 cut(s) 300, 309, 449
PctI GAATGC 1 cut(s) 524
PfeI GAWTC 2 cut(s) 296, 538
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 5 cut(s) 207, 266, 290, 386, 389
PleI GAGTC 2 cut(s) 164, 442
PpsI GAGTC 2 cut(s) 164, 442
PshAI GACNNNNGTC 1 cut(s) 602
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 3 cut(s) 52, 216, 344
PsuI RGATCY 1 cut(s) 165
PsyI GACNNNGTC 1 cut(s) 194
SatI GCNGC 5 cut(s) 206, 265, 289, 385, 388
Sau3AI GATC 3 cut(s) 133, 165, 457
Sau96I GGNCC 3 cut(s) 52, 216, 344
SchI GAGTC 2 cut(s) 165, 443
ScrFI CCNGG 2 cut(s) 50, 214
SduI GDGCHC 3 cut(s) 214, 519, 588
SetI ASST 8 cut(s) 93, 98, 122, 283, 382, 413, 486, 585
SfuI TTCGAA 2 cut(s) 506, 541
SinI GGWCC 1 cut(s) 344
Sse9I AATT 3 cut(s) 75, 400, 508
SspI AATATT 1 cut(s) 546
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 48, 212
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 2 cut(s) 28, 34
TaqI TCGA 6 cut(s) 189, 284, 405, 468, 506, 541
TaqII GACCGA 1 cut(s) 592
TasI AATT 3 cut(s) 75, 400, 508
TauI GCSGC 5 cut(s) 208, 267, 291, 387, 390
TfiI GAWTC 2 cut(s) 296, 538
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspGWI ACGGA 4 cut(s) 289, 321, 336, 372
TspRI CASTG 1 cut(s) 379
Tth111I GACNNNGTC 1 cut(s) 194
VneI GTGCAC 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 1 cut(s) 400
XmaJI CCTAGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 477
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.