Rorug04G0188900

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
32807161 .. 32807484
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0188900.1

Sequence Viewer

Length: 324 bp
ATGCAAACATTAATTGGTAAAGATGAAGCAATGGCAATTGTTAGCTTGCTGCCTAAGCTTAAGCAATTAATATTGAAGAATGCATATATCGATCGGGATGATCTTGTGATGCTACTGCAGGGCTGCAACGAGCTTGTGCGTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGAAGATGAAGAAATAGCTAAGCTTGCTTCTGATATTGCTGATATCAGCTCTCAGGGTTCCACACTATTTGATTATGATGATTACGGACATATTTCCCGTGATGAAGATGTTTATGGATACGACCGATTAGTCACGCAATTATACTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

4.11

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 6 cut(s) 45, 58, 133, 191, 196, 222
AluI AGCT 6 cut(s) 45, 58, 133, 191, 196, 222
ApeKI GCWGC 2 cut(s) 49, 123
AseI ATTAAT 2 cut(s) 11, 68
BbvI GCAGC 2 cut(s) 36, 110
BciVI GTATCC 1 cut(s) 284
BfaI CTAG 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 59
BfuI GTATCC 1 cut(s) 284
BisI GCNGC 2 cut(s) 50, 124
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 2 cut(s) 51, 125
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 54
Bpu1102I GCTNAGC 1 cut(s) 192
Bsa29I ATCGAT 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 36
BseCI ATCGAT 1 cut(s) 90
BseGI GGATG 2 cut(s) 103, 151
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 36, 110
Bsh1285I CGRYCG 2 cut(s) 94, 298
BshVI ATCGAT 1 cut(s) 90
BsiEI CGRYCG 2 cut(s) 94, 298
BsmI GAATGC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 91, 100
Bsp1720I GCTNAGC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 36
BssMI GATC 2 cut(s) 91, 100
BstAFI CTTAAG 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 47, 198
BstDEI CTNAG 3 cut(s) 54, 192, 225
BstF5I GGATG 2 cut(s) 103, 151
BstKTI GATC 2 cut(s) 94, 103
BstMBI GATC 2 cut(s) 91, 100
BstMCI CGRYCG 2 cut(s) 94, 298
BstMWI GCNNNNNNNGC 2 cut(s) 55, 197
BstSFI CTRYAG 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 36, 110
Bsu15I ATCGAT 1 cut(s) 90
BsuI GTATCC 1 cut(s) 284
BsuTUI ATCGAT 1 cut(s) 90
BtsCI GGATG 2 cut(s) 103, 151
Cac8I GCNNGC 2 cut(s) 47, 198
ClaI ATCGAT 1 cut(s) 90
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviJI RGCY 7 cut(s) 45, 58, 123, 133, 191, 196, 222
CviKI_1 RGCY 7 cut(s) 45, 58, 123, 133, 191, 196, 222
DdeI CTNAG 3 cut(s) 54, 192, 225
DpnI GATC 2 cut(s) 93, 102
DpnII GATC 2 cut(s) 91, 100
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 217
EcoRV GATATC 1 cut(s) 217
EcoT22I ATGCAT 1 cut(s) 85
FaiI YATR 7 cut(s) 85, 87, 161, 249, 264, 288, 316
Fnu4HI GCNGC 2 cut(s) 50, 124
FokI GGATG 2 cut(s) 110, 158
Fsp4HI GCNGC 2 cut(s) 50, 124
FspBI CTAG 1 cut(s) 322
GluI GCNGC 2 cut(s) 50, 124
HindIII AAGCTT 2 cut(s) 56, 194
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 95
HpyCH4V TGCA 4 cut(s) 4, 83, 118, 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 197
HpyF3I CTNAG 3 cut(s) 54, 192, 225
Kzo9I GATC 2 cut(s) 91, 100
LpnPI CCDG 2 cut(s) 104, 212
Lsp1109I GCAGC 2 cut(s) 36, 110
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 93, 102
MboI GATC 2 cut(s) 91, 100
MboII GAAGA 4 cut(s) 88, 188, 194, 290
MfeI CAATTG 2 cut(s) 36, 154
MluCI AATT 5 cut(s) 12, 36, 65, 154, 311
MnlI CCTC 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 85
MseI TTAA 3 cut(s) 11, 60, 68
MspCI CTTAAG 1 cut(s) 59
MunI CAATTG 2 cut(s) 36, 154
Mva1269I GAATGC 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 55, 197
NdeII GATC 2 cut(s) 91, 100
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 85
PctI GAATGC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 51, 125
Ple19I CGATCG 1 cut(s) 94
PshBI ATTAAT 2 cut(s) 11, 68
PspN4I GGNNCC 1 cut(s) 232
PstI CTGCAG 1 cut(s) 120
PvuI CGATCG 1 cut(s) 94
SaqAI TTAA 3 cut(s) 11, 60, 68
SatI GCNGC 2 cut(s) 50, 124
Sau3AI GATC 2 cut(s) 91, 100
SetI ASST 7 cut(s) 47, 60, 135, 166, 193, 198, 224
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 5 cut(s) 12, 36, 65, 154, 311
SspI AATATT 1 cut(s) 72
SspMI CTAG 1 cut(s) 322
TaqI TCGA 1 cut(s) 90
TaqII GACCGA 1 cut(s) 312
TasI AATT 5 cut(s) 12, 36, 65, 154, 311
Tru1I TTAA 3 cut(s) 11, 60, 68
Tru9I TTAA 3 cut(s) 11, 60, 68
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 49, 123
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 39, 195, 291
TspGWI ACGGA 1 cut(s) 273
Vha464I CTTAAG 1 cut(s) 59
VspI ATTAAT 2 cut(s) 11, 68
XspI CTAG 1 cut(s) 322
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.