Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

31611790 .. 31624707

Gene Structure 12918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0300700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCGTGTCCCCGAGGAGGAACATCCCAATGCTATCAACAAGTTACTGGAGGCGCTTGACGCCACAGTCTCCACCGAGCTGCCTATTGACGTGGCCATATGGGATATGACTTTGCGATTCGGCAGCGATGCCGTATCTGAATCCATGGACATGTATAAGCCCAATCTCGTTCCCGCAACAAGGTCATCGATTGAAGCCCTGGAGAGAGTGAACCTCGATCATACGTTGGCTTTTGAAGATCCATGTGTAATTTGTTTGGAGGATTTCAGTGTTGATCAAATGGTTATCCACTTGCCCTGTTCGCACTATTATCATGAACATTGCATTGTCCGGTCACTGGAGATCAGTCACTTGTGTCCCCTCTGCCGATACCCAATGCCAACTCTGGTGGAGGAAGTGCCTCCTCCTCAACCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

139

Amino Acids

15.77

Weight (kDa)

4.57

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	77 - 123	1.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	82 - 123	4.4e-13	Ring finger domain
zf-RING_11	PF17123	82 - 109	1.8e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	82 - 122	1.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	82 - 123	6.7e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	82 - 120	8.2e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	3 cut(s)	16, 180, 337
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	194, 236
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	79, 123
AspLEI	GCGC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	66, 135
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	73
BfoI	RGCGCY	1 cut(s)	56
BisI	GCNGC	2 cut(s)	80, 124
BlsI	GCNGC	2 cut(s)	81, 125
Bme1390I	CCNGG	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	11
BmgBI	CACGTC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
BpmI	CTGGAG	3 cut(s)	68, 221, 359
Bsa29I	ATCGAT	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	12, 144, 198
BsaWI	WCCGGW	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 180, 337
Bse1I	ACTGG	2 cut(s)	51, 342
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	12, 144, 198
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	3 cut(s)	16, 180, 337
BseMI	GCAATG	1 cut(s)	319
BseNI	ACTGG	2 cut(s)	51, 342
BseRI	GAGGAG	3 cut(s)	29, 393, 396
BseXI	GCAGC	2 cut(s)	66, 135
BshFI	GGCC	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	3 cut(s)	16, 180, 337
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	217, 238, 274, 342
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	95
BspDI	ATCGAT	1 cut(s)	188
BspHI	TCATGA	1 cut(s)	313
BspPI	GGATC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	319
BsrI	ACTGG	2 cut(s)	51, 342
BssECI	CCNNGG	3 cut(s)	12, 144, 198
BssMI	GATC	4 cut(s)	217, 238, 274, 342
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	4 cut(s)	220, 241, 277, 345
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	4 cut(s)	217, 238, 274, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 301
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	66, 135
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	95
BsuTUI	ATCGAT	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	274, 335
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	188
CseI	GACGC	1 cut(s)	68
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	4 cut(s)	145, 151, 243, 314
CviJI	RGCY	5 cut(s)	79, 95, 160, 197, 230
CviKI_1	RGCY	5 cut(s)	79, 95, 160, 197, 230
DpnI	GATC	4 cut(s)	219, 240, 276, 344
DpnII	GATC	4 cut(s)	217, 238, 274, 342
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	148, 154, 246, 317
FaiI	YATR	9 cut(s)	98, 100, 107, 146, 152, 156, 222, 244, 315
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	4 cut(s)	144, 150, 242, 313
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	80, 124
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	80, 124
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	2 cut(s)	80, 124
GsuI	CTGGAG	3 cut(s)	68, 221, 359
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	331
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	148, 154, 246, 317
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	2 cut(s)	117, 140
HpaII	CCGG	1 cut(s)	331
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	90, 224
HpyCH4V	TGCA	1 cut(s)	324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 301
HpySE526I	ACGT	2 cut(s)	90, 224
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	148, 154, 246, 317
HspAI	GCGC	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	217, 238, 274, 342
LpnPI	CCDG	7 cut(s)	32, 185, 212, 310, 323, 344, 371
Lsp1109I	GCAGC	2 cut(s)	66, 135
LweI	GCATC	1 cut(s)	118
MaeII	ACGT	2 cut(s)	90, 224
MaeIII	GTNAC	3 cut(s)	42, 333, 347
MalI	GATC	4 cut(s)	219, 240, 276, 344
MboI	GATC	4 cut(s)	217, 238, 274, 342
MboII	GAAGA	1 cut(s)	248
MflI	RGATCY	1 cut(s)	238
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	1 cut(s)	249
MluNI	TGGCCA	1 cut(s)	95
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MslI	CAYNNNNRTG	2 cut(s)	27, 149
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	59, 301
NcoI	CCATGG	1 cut(s)	144
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	4 cut(s)	217, 238, 274, 342
NlaIII	CATG	4 cut(s)	148, 154, 246, 317
NmuCI	GTSAC	2 cut(s)	333, 347
NspI	RCATGY	1 cut(s)	154
PagI	TCATGA	1 cut(s)	313
PciI	ACATGT	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	117, 140
PkrI	GCNGC	2 cut(s)	81, 125
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	238
RseI	CAYNNNNRTG	2 cut(s)	27, 149
SatI	GCNGC	2 cut(s)	80, 124
Sau3AI	GATC	4 cut(s)	217, 238, 274, 342
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	5 cut(s)	81, 93, 185, 216, 227
SfaNI	GCATC	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	27, 149
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	2 cut(s)	93, 227
TaqI	TCGA	2 cut(s)	188, 216
TasI	AATT	1 cut(s)	249
TfiI	GAWTC	2 cut(s)	117, 140
TscAI	CASTG	2 cut(s)	274, 342
TseFI	GTSAC	2 cut(s)	333, 347
TseI	GCWGC	2 cut(s)	79, 123
Tsp45I	GTSAC	2 cut(s)	333, 347
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	2 cut(s)	274, 342
XceI	RCATGY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.