Rh5DG297400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001308
Physical Location & Seq
Forward (+)
37460596 .. 37464190
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG297400.1

Sequence Viewer

Length: 369 bp
ATGGTTGGGCTGTGCTTTGTACTCGATCCGCAAGATTTCGCCGTCGCCGACTTGGCGCAAATTGGAGTCGCTCCGAGATCGGTTAGGCCTGTGCTTCGTCTTCAAAAATCTGCTCACCTTCTCCAATCGTATTCCCGTCGCCGTTATCGATACATCATCCAGCAACAGCTTCAACGCGTCTCATGCCTCCACCACCGCCATCCCCGCTTAACCTTTCACAACGATTTTCCGCTCCGAAACACCGACCAAGATGCTTTCCGGCAACAGCTTGCTCTAGATATATACAAGCCTAATTCCGATAGGTTGGTCAACGATTACACCCATGAAAAAGTAGGGCATCAAATGCCGAAGTATTCTAACTTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.41

Weight (kDa)

9.69

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 232
AccII CGCG 1 cut(s) 177
AciI CCGC 4 cut(s) 29, 196, 205, 230
AclWI GGATC 1 cut(s) 20
AfaI GTAC 1 cut(s) 21
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 2 cut(s) 104, 173
AluBI AGCT 2 cut(s) 169, 268
AluI AGCT 2 cut(s) 169, 268
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 20
AoxI GGCC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 92
BccI CCATC 1 cut(s) 207
BceAI ACGGC 2 cut(s) 26, 126
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 275
BglI GCCNNNNNGGC 1 cut(s) 53
BmsI GCATC 2 cut(s) 241, 346
BpiI GAAGAC 1 cut(s) 92
Bsa29I ATCGAT 1 cut(s) 148
BseCI ATCGAT 1 cut(s) 148
BseGI GGATG 2 cut(s) 156, 199
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 88
BshVI ATCGAT 1 cut(s) 148
BsiSI CCGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 184
BsmBI CGTCTC 1 cut(s) 184
BsnI GGCC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 25, 77
BspACI CCGC 4 cut(s) 29, 196, 205, 230
BspANI GGCC 1 cut(s) 88
BspDI ATCGAT 1 cut(s) 148
BspFNI CGCG 1 cut(s) 177
BspPI GGATC 1 cut(s) 20
BsrBI CCGCTC 1 cut(s) 232
BssMI GATC 2 cut(s) 25, 77
BstAPI GCANNNNNTGC 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 270
BstF5I GGATG 2 cut(s) 156, 199
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 2 cut(s) 28, 80
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 2 cut(s) 25, 77
BstMWI GCNNNNNNNGC 4 cut(s) 53, 183, 204, 343
BstUI CGCG 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 92
Bsu15I ATCGAT 1 cut(s) 148
BsuRI GGCC 1 cut(s) 88
BsuTUI ATCGAT 1 cut(s) 148
BtsCI GGATG 2 cut(s) 156, 199
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 1 cut(s) 58
ClaI ATCGAT 1 cut(s) 148
CseI GACGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 20
CviAII CATG 2 cut(s) 183, 323
CviJI RGCY 5 cut(s) 10, 88, 169, 268, 289
CviKI_1 RGCY 5 cut(s) 10, 88, 169, 268, 289
CviQI GTAC 1 cut(s) 20
DpnI GATC 2 cut(s) 27, 79
DpnII GATC 2 cut(s) 25, 77
Eco147I AGGCCT 1 cut(s) 88
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 2 cut(s) 186, 326
FaiI YATR 4 cut(s) 184, 281, 283, 324
FatI CATG 2 cut(s) 182, 322
FauI CCCGC 1 cut(s) 212
FokI GGATG 2 cut(s) 143, 186
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 259
HgaI GACGC 1 cut(s) 166
HhaI GCGC 1 cut(s) 58
Hin1II CATG 2 cut(s) 186, 326
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 1 cut(s) 66
HpaII CCGG 1 cut(s) 259
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 3 cut(s) 75, 236, 298
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 2 cut(s) 47, 141
HpyAV CCTTC 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 183, 204, 343
Hsp92II CATG 2 cut(s) 186, 326
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 25, 77
LmnI GCTCC 2 cut(s) 76, 237
LpnPI CCDG 3 cut(s) 102, 173, 272
LweI GCATC 2 cut(s) 241, 346
MaeI CTAG 1 cut(s) 275
MalI GATC 2 cut(s) 27, 79
MbiI CCGCTC 1 cut(s) 232
MboI GATC 2 cut(s) 25, 77
MboII GAAGA 1 cut(s) 92
MluCI AATT 2 cut(s) 60, 292
MluI ACGCGT 1 cut(s) 175
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 1 cut(s) 197
MseI TTAA 1 cut(s) 209
MspI CCGG 1 cut(s) 259
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 4 cut(s) 53, 183, 204, 343
NdeII GATC 2 cut(s) 25, 77
NlaIII CATG 2 cut(s) 186, 326
PceI AGGCCT 1 cut(s) 88
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 145
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 209
Sau3AI GATC 2 cut(s) 25, 77
SchI GAGTC 1 cut(s) 75
SetI ASST 5 cut(s) 120, 171, 215, 270, 305
SfaNI GCATC 2 cut(s) 241, 346
Sse9I AATT 2 cut(s) 60, 292
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 4 cut(s) 29, 196, 205, 230
SspMI CTAG 1 cut(s) 275
StuI AGGCCT 1 cut(s) 88
TaqI TCGA 2 cut(s) 24, 148
TasI AATT 2 cut(s) 60, 292
TatI WGTACW 1 cut(s) 19
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 274
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.