Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Reverse (-)

37836840 .. 37837752

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0266300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCAACTCGATATATAGAACTGACCGTTATCGCAGCCGAAAACCTCCAATCCAATCGCAAACCCTTGAAGAAAAACTCCTTCGTCACCGTCCGGACCGACGCCGCCTCCAAATCGTACCGGACTGCGGAGACGGACTCCGAAGGCGGAGGGCCAAGATGGAATGAGAAGTTAGTGATCGAGGTTCCTGCGCAAGCCAGGAATCTGATCATGGAAGTGCAATGCCAGAACGGGGCGAGGACGATCGGAGCGGCGACTATTCCGTTGACGGACTTCATCGGCGGTTGGGTGCCCGAGAGCTACATGCATTTTCTGAGTTACAGGCTGAGGGATGAGAGAGGTGTCAGGAATGGGATTATGAATATCTCGGTGAGGATGAAGGTGGACGAAGGTGCGACGTCGACGTACGCGAGGAAGTTGTCGAGTGGTTGCGCTACGACGTCGTCGCAGACCAAGTTGGGGTATCCGGCGGTGGATAACAGTGGCGTCGTAACTGGGGTTCCGGTGAATTGGAATAGCTATTCTCGAGTTCAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04137 ko04214 map04137 map04214

Pfam Domains

Protein Families

EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

179

Amino Acids

19.73

Weight (kDa)

9.45

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	5 - 92	7.3e-09	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	401, 443
Acc16I	TGCGCA	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	401
AccII	CGCG	1 cut(s)	410
AccIII	TCCGGA	1 cut(s)	93
AciI	CCGC	6 cut(s)	105, 128, 147, 251, 282, 470
AcyI	GRCGYC	4 cut(s)	102, 398, 440, 486
AfaI	GTAC	2 cut(s)	119, 407
AfiI	CCNNNNNNNGG	3 cut(s)	127, 232, 459
AgsI	TTSAA	2 cut(s)	70, 533
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	2 cut(s)	300, 519
AluI	AGCT	2 cut(s)	300, 519
Alw26I	GTCTC	1 cut(s)	125
Ama87I	CYCGRG	2 cut(s)	293, 525
Aor13HI	TCCGGA	1 cut(s)	93
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	193, 434
AspS9I	GGNCC	2 cut(s)	96, 152
AsuHPI	GGTGA	3 cut(s)	79, 382, 517
AvaI	CYCGRG	2 cut(s)	293, 525
AvaII	GGWCC	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	289
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	153
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	474
BclI	TGATCA	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	474
BisI	GCNGC	3 cut(s)	36, 105, 252
BlsI	GCNGC	3 cut(s)	37, 106, 253
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	2 cut(s)	293, 525
BmgT120I	GGNCC	2 cut(s)	96, 152
BmiI	GGNNCC	3 cut(s)	186, 291, 501
BmrFI	CCNGG	1 cut(s)	199
BmrI	ACTGGG	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	504
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bpu10I	CCTNAGC	1 cut(s)	326
BsaHI	GRCGYC	4 cut(s)	102, 398, 440, 486
BsaWI	WCCGGW	3 cut(s)	93, 120, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 232, 459
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	227
BseAI	TCCGGA	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	337, 381
BseLI	CCNNNNNNNGG	3 cut(s)	127, 232, 459
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	305, 317
BseNI	ACTGG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	410
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	289
BsiEI	CGRYCG	1 cut(s)	246
BsiHKCI	CYCGRG	2 cut(s)	293, 525
BsiSI	CCGG	4 cut(s)	94, 121, 467, 503
BsiWI	CGTACG	1 cut(s)	405
BslI	CCNNNNNNNGG	3 cut(s)	127, 232, 459
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	154
BsoBI	CYCGRG	2 cut(s)	293, 525
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp13I	TCCGGA	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	177, 207, 243
BspACI	CCGC	6 cut(s)	105, 128, 147, 251, 282, 470
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	2 cut(s)	306, 318
BspEI	TCCGGA	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	186, 291, 501
BspT107I	GGYRCC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	499
BssMI	GATC	3 cut(s)	177, 207, 243
BssNI	GRCGYC	4 cut(s)	102, 398, 440, 486
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	28, 91, 482
BstACI	GRCGYC	4 cut(s)	102, 398, 440, 486
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	314, 326
BstF5I	GGATG	2 cut(s)	337, 381
BstFNI	CGCG	1 cut(s)	410
BstHHI	GCGC	2 cut(s)	193, 434
BstKTI	GATC	3 cut(s)	180, 210, 246
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	177, 207, 243
BstMCI	CGRYCG	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	197
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	337, 381
BtsIMutI	CAGTG	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	2 cut(s)	193, 434
Cfr13I	GGNCC	2 cut(s)	96, 152
CpoI	CGGWCCG	1 cut(s)	96
CseI	GACGC	2 cut(s)	110, 475
Csp6I	GTAC	2 cut(s)	118, 406
CspI	CGGWCCG	1 cut(s)	96
CviAII	CATG	2 cut(s)	211, 304
CviJI	RGCY	6 cut(s)	38, 154, 197, 300, 325, 519
CviKI_1	RGCY	6 cut(s)	38, 154, 197, 300, 325, 519
CviQI	GTAC	2 cut(s)	118, 406
DdeI	CTNAG	2 cut(s)	314, 326
DpnI	GATC	3 cut(s)	179, 209, 245
DpnII	GATC	3 cut(s)	177, 207, 243
EciI	GGCGGA	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	96
Eco88I	CYCGRG	2 cut(s)	293, 525
EcoRII	CCWGG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	2 cut(s)	214, 307
FaiI	YATR	5 cut(s)	15, 17, 212, 305, 359
FatI	CATG	2 cut(s)	210, 303
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	3 cut(s)	36, 105, 252
FokI	GGATG	2 cut(s)	344, 388
Fsp4HI	GCNGC	3 cut(s)	36, 105, 252
FspI	TGCGCA	1 cut(s)	192
GlaI	GCGC	2 cut(s)	192, 433
GluI	GCNGC	3 cut(s)	36, 105, 252
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	4 cut(s)	94, 121, 467, 503
HgaI	GACGC	2 cut(s)	110, 475
HhaI	GCGC	2 cut(s)	193, 434
Hin1I	GRCGYC	4 cut(s)	102, 398, 440, 486
Hin1II	CATG	2 cut(s)	214, 307
Hin6I	GCGC	2 cut(s)	191, 432
HinP1I	GCGC	2 cut(s)	191, 432
HincII	GTYRAC	2 cut(s)	267, 402
HindII	GTYRAC	2 cut(s)	267, 402
HinfI	GANTC	2 cut(s)	137, 202
HpaII	CCGG	4 cut(s)	94, 121, 467, 503
HphI	GGTGA	3 cut(s)	79, 382, 517
Hpy166II	GTNNAC	3 cut(s)	267, 385, 402
Hpy188I	TCNGA	4 cut(s)	142, 207, 248, 315
Hpy188III	TCNNGA	3 cut(s)	94, 346, 525
Hpy8I	GTNNAC	3 cut(s)	267, 385, 402
Hpy99I	CGWCG	8 cut(s)	104, 400, 403, 406, 442, 445, 448, 491
HpyAV	CCTTC	4 cut(s)	91, 137, 373, 383
HpyCH4III	ACNGT	3 cut(s)	28, 91, 482
HpyCH4IV	ACGT	3 cut(s)	398, 404, 440
HpyCH4V	TGCA	2 cut(s)	220, 307
HpyF3I	CTNAG	2 cut(s)	314, 326
HpySE526I	ACGT	3 cut(s)	398, 404, 440
Hsp92I	GRCGYC	4 cut(s)	102, 398, 440, 486
Hsp92II	CATG	2 cut(s)	214, 307
HspAI	GCGC	2 cut(s)	191, 432
Kpn2I	TCCGGA	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	177, 207, 243
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	47
MaeII	ACGT	3 cut(s)	398, 404, 440
MaeIII	GTNAC	3 cut(s)	85, 317, 490
MalI	GATC	3 cut(s)	179, 209, 245
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	3 cut(s)	177, 207, 243
MboII	GAAGA	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	1 cut(s)	508
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	9 cut(s)	56, 118, 143, 175, 231, 321, 332, 366, 405
Mph1103I	ATGCAT	1 cut(s)	309
MroI	TCCGGA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	4 cut(s)	94, 121, 467, 503
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	410
NdeII	GATC	3 cut(s)	177, 207, 243
NlaIII	CATG	2 cut(s)	214, 307
NlaIV	GGNNCC	3 cut(s)	186, 291, 501
NmuCI	GTSAC	1 cut(s)	85
NsbI	TGCGCA	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	309
NspI	RCATGY	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	202
Pfl23II	CGTACG	1 cut(s)	405
PflFI	GACNNNGTC	1 cut(s)	442
PkrI	GCNGC	3 cut(s)	37, 106, 253
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspLI	CGTACG	1 cut(s)	405
PspN4I	GGNNCC	3 cut(s)	186, 291, 501
PspPI	GGNCC	2 cut(s)	96, 152
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PsyI	GACNNNGTC	1 cut(s)	442
PvuI	CGATCG	1 cut(s)	246
RsaI	GTAC	2 cut(s)	119, 407
RsaNI	GTAC	2 cut(s)	118, 406
RseI	CAYNNNNRTG	1 cut(s)	215
Rsr2I	CGGWCCG	1 cut(s)	96
RsrII	CGGWCCG	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	400
SatI	GCNGC	3 cut(s)	36, 105, 252
Sau3AI	GATC	3 cut(s)	177, 207, 243
Sau96I	GGNCC	2 cut(s)	96, 152
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	294
Sfr274I	CTCGAG	1 cut(s)	525
SgrDI	CGTCGACG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	525
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
Sse9I	AATT	1 cut(s)	508
SsiI	CCGC	6 cut(s)	105, 128, 147, 251, 282, 470
SspI	AATATT	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	3 cut(s)	28, 91, 482
TaiI	ACGT	3 cut(s)	401, 407, 443
TaqI	TCGA	5 cut(s)	10, 180, 401, 422, 526
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	1 cut(s)	508
TauI	GCSGC	2 cut(s)	107, 254
TfiI	GAWTC	1 cut(s)	202
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	265, 374, 392
TspGWI	ACGGA	3 cut(s)	149, 252, 284
TspRI	CASTG	1 cut(s)	487
Tth111I	GACNNNGTC	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	96
XceI	RCATGY	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	525
XmiI	GTMKAC	1 cut(s)	401
ZraI	GACGTC	2 cut(s)	399, 441
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.