Rh6AG110700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001308
Physical Location & Seq
Forward (+)
16159027 .. 16160714
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG110700.1

Sequence Viewer

Length: 705 bp
ATGCAGCTCTTGCAAGCTATCAACTGTTTTCTGCATTCCTCAGTGGCAACTCATAGTCACTTTCCTGGTATTCGCTATTATTGTGTGAGGGCTGGTCTTATCCAGTGGGTGGGTAATGTCATTAGTATATACAGGGTCTTTAAGTCTTGGCAAAACCGCATCCAACTAGCGCAGCTCTCAGCAGTAGGTGGTGGCAATTCAGAAGGCTCTGTTCCTCCAGCTGTTCCGCGACCTAGTGATATGTACTATGGTACAATCATACCAGCACTCAAAGAGAAAGGTATAAGGAGAGTAATTTCACGAAGAGACTGGCCTCATGAGGTGAAGCCTAAAGTTCTCATGGATCTTATGAAGGTGACTCCTAGACAGCTTCTTTATCAAGAGCTCTGGTGTGCCAGTGAAGGGTTCAAATCCTTCAGCTCGAAACAGAAAAGCGTCACTGACCTTCAACCCGACGACTCTGAGCAGCACGAAGGTCTCGAGAATGCAAGGGCTGCTGGTGACGAGGTCCTTGATGATGAGGTAGACCTGGCTGGGCTTGAAATCCTTGACAGAAAAAGGAGAGAACTTGACGAGTTAAAGCTTATCGGTGGAGTGATTGACCCAGGAGACGACATCGGAGACGAGTTGCTCGGTCTTGAGGCTCGAGTCACGGCTACCCCACTCGTTCTCGACGACCAATTGAAGCGTCGACCACCGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

234

Amino Acids

26.24

Weight (kDa)

5.78

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 109
AccI GTMKAC 2 cut(s) 525, 691
AccII CGCG 1 cut(s) 229
AciI CCGC 3 cut(s) 157, 227, 698
AclWI GGATC 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 400
AfaI GTAC 2 cut(s) 245, 253
AfiI CCNNNNNNNGG 2 cut(s) 109, 402
AgsI TTSAA 4 cut(s) 409, 449, 542, 685
AjnI CCWGG 3 cut(s) 64, 528, 604
AluBI AGCT 8 cut(s) 7, 17, 175, 221, 370, 385, 420, 583
AluI AGCT 8 cut(s) 7, 17, 175, 221, 370, 385, 420, 583
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 4 cut(s) 300, 482, 603, 615
AlwI GGATC 1 cut(s) 351
Ama87I CYCGRG 2 cut(s) 479, 645
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 4, 172, 466, 494
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 508
AsuHPI GGTGA 3 cut(s) 334, 367, 512
AvaI CYCGRG 2 cut(s) 479, 645
AvaII GGWCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 4 cut(s) 16, 184, 478, 481
BceAI ACGGC 1 cut(s) 669
BciT130I CCWGG 3 cut(s) 66, 530, 606
BcoDI GTCTC 4 cut(s) 300, 482, 603, 615
BfaI CTAG 3 cut(s) 167, 234, 363
BisI GCNGC 4 cut(s) 5, 173, 467, 495
BlsI GCNGC 4 cut(s) 6, 174, 468, 496
Bme1390I CCNGG 3 cut(s) 66, 530, 606
Bme18I GGWCC 1 cut(s) 508
BmeT110I CYCGRG 2 cut(s) 479, 645
BmgT120I GGNCC 1 cut(s) 508
BmrFI CCNGG 3 cut(s) 66, 530, 606
BmsI GCATC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 659
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 604
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 402
Bse1I ACTGG 3 cut(s) 103, 314, 396
BseBI CCWGG 3 cut(s) 66, 530, 606
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 109, 402
BseMII CTCAG 3 cut(s) 54, 192, 453
BseNI ACTGG 3 cut(s) 103, 314, 396
BseXI GCAGC 4 cut(s) 16, 184, 478, 481
BseYI CCCAGC 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 2 cut(s) 479, 645
BslI CCNNNNNNNGG 2 cut(s) 109, 402
BsmAI GTCTC 4 cut(s) 300, 482, 603, 615
BsmBI CGTCTC 2 cut(s) 603, 615
BsmI GAATGC 2 cut(s) 34, 490
BsnI GGCC 1 cut(s) 313
Bso31I GGTCTC 1 cut(s) 482
BsoBI CYCGRG 2 cut(s) 479, 645
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 3 cut(s) 157, 227, 698
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 3 cut(s) 53, 191, 454
BspFNI CGCG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 316
BspPI GGATC 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 482
BsrI ACTGG 3 cut(s) 103, 314, 396
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 1 cut(s) 343
Bst2UI CCWGG 3 cut(s) 66, 530, 606
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 298
BstAPI GCANNNNNTGC 2 cut(s) 10, 494
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 40, 178, 462
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 4 cut(s) 300, 482, 603, 615
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 2 cut(s) 10, 494
BstNI CCWGG 3 cut(s) 66, 530, 606
BstSCI CCNGG 3 cut(s) 64, 528, 604
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 4 cut(s) 16, 184, 478, 481
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 4 cut(s) 48, 110, 403, 438
Cac8I GCNNGC 1 cut(s) 15
CciI TCATGA 1 cut(s) 316
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 508
CseI GACGC 2 cut(s) 424, 677
Csp6I GTAC 2 cut(s) 244, 252
CviAII CATG 2 cut(s) 317, 340
CviQI GTAC 2 cut(s) 244, 252
DdeI CTNAG 3 cut(s) 40, 178, 462
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Ecl136II GAGCTC 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 400
Eco88I CYCGRG 2 cut(s) 479, 645
EcoICRI GAGCTC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 3 cut(s) 64, 528, 604
EcoT38I GRGCYC 1 cut(s) 387
Esp3I CGTCTC 2 cut(s) 603, 615
FaeI CATG 2 cut(s) 320, 343
FatI CATG 2 cut(s) 316, 339
FblI GTMKAC 2 cut(s) 525, 691
Fnu4HI GCNGC 4 cut(s) 5, 173, 467, 495
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 4 cut(s) 5, 173, 467, 495
FspBI CTAG 3 cut(s) 167, 234, 363
GlaI GCGC 1 cut(s) 171
GluI GCNGC 4 cut(s) 5, 173, 467, 495
GsaI CCCAGC 1 cut(s) 537
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 313
HgaI GACGC 2 cut(s) 424, 677
HhaI GCGC 1 cut(s) 172
Hin1II CATG 2 cut(s) 320, 343
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 692
HindII GTYRAC 1 cut(s) 692
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 3 cut(s) 358, 458, 648
HphI GGTGA 3 cut(s) 334, 367, 512
Hpy166II GTNNAC 2 cut(s) 526, 692
Hpy188I TCNGA 3 cut(s) 202, 463, 620
Hpy188III TCNNGA 7 cut(s) 300, 317, 380, 479, 481, 638, 671
Hpy8I GTNNAC 2 cut(s) 526, 692
Hpy99I CGWCG 3 cut(s) 458, 677, 693
HpyAV CCTTC 6 cut(s) 197, 346, 395, 424, 455, 467
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 4 cut(s) 4, 13, 34, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 494
HpyF3I CTNAG 3 cut(s) 40, 178, 462
Hsp92II CATG 2 cut(s) 320, 343
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 343
Lsp1109I GCAGC 4 cut(s) 16, 184, 478, 481
LweI GCATC 1 cut(s) 168
MaeI CTAG 3 cut(s) 167, 234, 363
MaeIII GTNAC 5 cut(s) 56, 355, 436, 500, 649
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 1 cut(s) 315
MfeI CAATTG 1 cut(s) 680
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 3 cut(s) 196, 294, 680
MlyI GAGTC 3 cut(s) 352, 452, 657
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 8 cut(s) 49, 81, 225, 313, 324, 499, 514, 634
MseI TTAA 2 cut(s) 141, 578
MspA1I CMGCKG 1 cut(s) 221
MspR9I CCNGG 3 cut(s) 66, 530, 606
MunI CAATTG 1 cut(s) 680
Mva1269I GAATGC 2 cut(s) 34, 490
MvaI CCWGG 3 cut(s) 66, 530, 606
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 10, 494
NdeII GATC 1 cut(s) 343
NlaIII CATG 2 cut(s) 320, 343
NmuCI GTSAC 5 cut(s) 56, 355, 436, 500, 649
PaeR7I CTCGAG 2 cut(s) 479, 645
PagI TCATGA 1 cut(s) 316
PcsI WCGNNNNNNNCGW 2 cut(s) 477, 672
PctI GAATGC 2 cut(s) 34, 490
PflFI GACNNNGTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 4 cut(s) 6, 174, 468, 496
PleI GAGTC 3 cut(s) 352, 452, 656
PpsI GAGTC 3 cut(s) 352, 452, 656
PpuMI RGGWCCY 1 cut(s) 508
Psp124BI GAGCTC 1 cut(s) 387
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 3 cut(s) 64, 528, 604
PspFI CCCAGC 1 cut(s) 533
PspGI CCWGG 3 cut(s) 64, 528, 604
PspPI GGNCC 1 cut(s) 508
PspPPI RGGWCCY 1 cut(s) 508
PspXI VCTCGAGB 1 cut(s) 645
PsuI RGATCY 1 cut(s) 343
PsyI GACNNNGTC 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 221
RsaI GTAC 2 cut(s) 245, 253
RsaNI GTAC 2 cut(s) 244, 252
SacI GAGCTC 1 cut(s) 387
SalI GTCGAC 1 cut(s) 690
SaqAI TTAA 2 cut(s) 141, 578
SatI GCNGC 4 cut(s) 5, 173, 467, 495
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 1 cut(s) 508
SchI GAGTC 3 cut(s) 352, 452, 657
ScrFI CCNGG 3 cut(s) 66, 530, 606
SduI GDGCHC 1 cut(s) 387
SfaNI GCATC 1 cut(s) 168
Sfr274I CTCGAG 2 cut(s) 479, 645
SinI GGWCC 1 cut(s) 508
SlaI CTCGAG 2 cut(s) 479, 645
SmlI CTYRAG 3 cut(s) 479, 638, 645
SmoI CTYRAG 3 cut(s) 479, 638, 645
Sse9I AATT 3 cut(s) 196, 294, 680
SsiI CCGC 3 cut(s) 157, 227, 698
SspMI CTAG 3 cut(s) 167, 234, 363
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 3 cut(s) 64, 528, 604
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 5 cut(s) 422, 480, 646, 672, 691
TaqII GACCGA 1 cut(s) 623
TasI AATT 3 cut(s) 196, 294, 680
TatI WGTACW 1 cut(s) 243
Tru1I TTAA 2 cut(s) 141, 578
Tru9I TTAA 2 cut(s) 141, 578
TscAI CASTG 4 cut(s) 48, 110, 403, 445
TseFI GTSAC 5 cut(s) 56, 355, 436, 500, 649
TseI GCWGC 4 cut(s) 4, 172, 466, 494
Tsp45I GTSAC 5 cut(s) 56, 355, 436, 500, 649
TspDTI ATGAA 1 cut(s) 365
TspRI CASTG 4 cut(s) 48, 110, 403, 445
Tth111I GACNNNGTC 1 cut(s) 506
Van91I CCANNNNNTGG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 508
XhoI CTCGAG 2 cut(s) 479, 645
XmiI GTMKAC 2 cut(s) 525, 691
XspI CTAG 3 cut(s) 167, 234, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.