Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Reverse (-)

54838700 .. 54839266

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003967

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCCGGAAGGCATCTGAATGGGAGAATGGTTGAGCTGTGCTTTGTACTCGATTTGCGAGATTTTGCTGTCGCCGACTTGGTGCAAATCGGAGTCACTCGGAGATCTGATAGGCCTGTGCTCGTTGATCACCTCCTCCGATTGTATTCCCATCACCGTCATCGACACCTCATCCAGAATAGTATTAAGTGCAGTGAAGAACTAAAGCGAGCTGATGCAATGATGCTAATGTACGCCTATGATCAGCCATTGACGCTTACTCGTATCTCTAGCTTCTGGCTCCCTGAGCTTCATCGGTTAGAGGTGAATGTACTAGTAATTTTGGTTGGATGCAAGTTGGATTTGAGAGACGAGCATGATTCGATGAGCATGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04137 ko04214 map04137 map04214

Pfam Domains

Protein Families

EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

126

Amino Acids

14.65

Weight (kDa)

6.7

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	5
AfaI	GTAC	3 cut(s)	48, 233, 312
AhlI	ACTAGT	1 cut(s)	313
AluBI	AGCT	4 cut(s)	37, 212, 273, 289
AluI	AGCT	4 cut(s)	37, 212, 273, 289
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	342
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	122, 146, 316
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	1 cut(s)	159
BclI	TGATCA	2 cut(s)	127, 241
BcoDI	GTCTC	1 cut(s)	342
BcuI	ACTAGT	1 cut(s)	313
BfaI	CTAG	2 cut(s)	270, 314
BglII	AGATCT	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	281
BmsI	GCATC	4 cut(s)	22, 205, 213, 320
Bpu10I	CCTNAGC	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	5
BseGI	GGATG	2 cut(s)	171, 335
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	342
BsmBI	CGTCTC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	104, 127, 241
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	277
BspEI	TCCGGA	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	225
BssMI	GATC	3 cut(s)	104, 127, 241
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	171, 335
BstKTI	GATC	3 cut(s)	107, 130, 244
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	3 cut(s)	104, 127, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 286
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	171, 335
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	210
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	47, 232, 311
CviAII	CATG	2 cut(s)	356, 370
CviJI	RGCY	7 cut(s)	37, 115, 212, 247, 273, 280, 289
CviKI_1	RGCY	7 cut(s)	37, 115, 212, 247, 273, 280, 289
CviQI	GTAC	3 cut(s)	47, 232, 311
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	106, 129, 243
DpnII	GATC	3 cut(s)	104, 127, 241
Eco147I	AGGCCT	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	2 cut(s)	359, 373
FaiI	YATR	3 cut(s)	240, 357, 371
FatI	CATG	2 cut(s)	355, 369
FbaI	TGATCA	2 cut(s)	127, 241
FokI	GGATG	2 cut(s)	158, 342
FspBI	CTAG	2 cut(s)	270, 314
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	359, 373
HinfI	GANTC	2 cut(s)	93, 359
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	3 cut(s)	122, 146, 316
Hpy188I	TCNGA	5 cut(s)	18, 92, 102, 109, 140
Hpy188III	TCNNGA	2 cut(s)	6, 175
HpyAV	CCTTC	1 cut(s)	3
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	4 cut(s)	85, 192, 218, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 286
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	359, 373
Kpn2I	TCCGGA	1 cut(s)	5
Ksp22I	TGATCA	2 cut(s)	127, 241
Kzo9I	GATC	3 cut(s)	104, 127, 241
LmnI	GCTCC	1 cut(s)	285
LpnPI	CCDG	5 cut(s)	19, 129, 188, 262, 297
LweI	GCATC	4 cut(s)	22, 205, 213, 320
MaeI	CTAG	2 cut(s)	270, 314
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	3 cut(s)	106, 129, 243
MboI	GATC	3 cut(s)	104, 127, 241
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	2 cut(s)	307, 318
MnlI	CCTC	4 cut(s)	143, 146, 179, 295
MroI	TCCGGA	1 cut(s)	5
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	253, 286
NdeII	GATC	3 cut(s)	104, 127, 241
NlaIII	CATG	2 cut(s)	359, 373
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	359
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	3 cut(s)	48, 233, 312
RsaNI	GTAC	3 cut(s)	47, 232, 311
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	104, 127, 241
SchI	GAGTC	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	7 cut(s)	39, 135, 171, 214, 275, 291, 306
SfaNI	GCATC	4 cut(s)	22, 205, 213, 320
SmiMI	CAYNNNNRTG	1 cut(s)	18
SpeI	ACTAGT	1 cut(s)	313
Sse9I	AATT	1 cut(s)	318
SseBI	AGGCCT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	270, 314
StuI	AGGCCT	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	3 cut(s)	51, 163, 362
TasI	AATT	1 cut(s)	318
TatI	WGTACW	2 cut(s)	46, 310
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	199
XspI	CTAG	2 cut(s)	270, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.