RchiOBHm_Chr7g0221621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001308
Physical Location & Seq
Reverse (-)
42688123 .. 42689488
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19831

Sequence Viewer

Length: 261 bp
ATGTCTACTTGCTCGGTGAGCAGTTCTACAAACCTCGGTGGATTAATGTGCGGCCAGCGGTATGATCTGATCGTTTGCTCATCTTGCTTCGCACTGGTGTTTTGGGATGATTCATCGTCGTCGGGGTCTGATCTGGCCTTCAATTTTGTCTACGAGGTGATGGTTTGGATTGGGCATTCGAATTGCGTGCACTTTGCTTTCAAGAGGATGATTCGAATCATGGCAGATGGATTAGATGATGCAAAGAGAATGATGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.57

Weight (kDa)

5.38

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 5, 150
AciI CCGC 2 cut(s) 51, 58
AcoI YGGCCR 1 cut(s) 52
AgsI TTSAA 2 cut(s) 142, 202
Alw21I GWGCWC 1 cut(s) 192
Alw44I GTGCAC 1 cut(s) 188
AoxI GGCC 2 cut(s) 52, 135
ApaLI GTGCAC 1 cut(s) 188
AseI ATTAAT 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 28, 169
AsuII TTCGAA 2 cut(s) 179, 214
BaeGI GKGCMC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 192
BccI CCATC 2 cut(s) 154, 221
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BfaI CTAG 1 cut(s) 259
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
BmsI GCATC 2 cut(s) 229, 243
Bpu14I TTCGAA 2 cut(s) 179, 214
BsaBI GATNNNNATC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 2 cut(s) 112, 213
BseJI GATNNNNATC 1 cut(s) 215
BseNI ACTGG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 192
BshFI GGCC 2 cut(s) 54, 137
BsiHKAI GWGCWC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 2 cut(s) 54, 137
Bsp119I TTCGAA 2 cut(s) 179, 214
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 64, 69, 130
BspACI CCGC 2 cut(s) 51, 58
BspANI GGCC 2 cut(s) 54, 137
BspT104I TTCGAA 2 cut(s) 179, 214
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 3 cut(s) 64, 69, 130
BstBI TTCGAA 2 cut(s) 179, 214
BstC8I GCNNGC 2 cut(s) 56, 188
BstF5I GGATG 2 cut(s) 112, 213
BstKTI GATC 3 cut(s) 67, 72, 133
BstMBI GATC 3 cut(s) 64, 69, 130
BstMWI GCNNNNNNNGC 2 cut(s) 18, 84
BstSLI GKGCMC 1 cut(s) 192
BsuRI GGCC 2 cut(s) 54, 137
BtsCI GGATG 2 cut(s) 112, 213
BtsIMutI CAGTG 1 cut(s) 92
Cac8I GCNNGC 2 cut(s) 56, 188
CviAII CATG 1 cut(s) 220
CviJI RGCY 2 cut(s) 54, 137
CviKI_1 RGCY 2 cut(s) 54, 137
DpnI GATC 3 cut(s) 66, 71, 132
DpnII GATC 3 cut(s) 64, 69, 130
EaeI YGGCCR 1 cut(s) 52
FaeI CATG 1 cut(s) 223
FaiI YATR 2 cut(s) 63, 221
FatI CATG 1 cut(s) 219
FblI GTMKAC 2 cut(s) 5, 150
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 2 cut(s) 119, 220
Fsp4HI GCNGC 1 cut(s) 52
FspBI CTAG 1 cut(s) 259
GluI GCNGC 1 cut(s) 52
HaeIII GGCC 2 cut(s) 54, 137
Hin1II CATG 1 cut(s) 223
HinfI GANTC 3 cut(s) 110, 211, 216
HphI GGTGA 2 cut(s) 28, 169
Hpy166II GTNNAC 3 cut(s) 6, 151, 190
Hpy188I TCNGA 2 cut(s) 69, 130
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 3 cut(s) 6, 151, 190
Hpy99I CGWCG 2 cut(s) 121, 124
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 190, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 84
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 3 cut(s) 64, 69, 130
LpnPI CCDG 3 cut(s) 68, 80, 119
LweI GCATC 2 cut(s) 229, 243
MaeI CTAG 1 cut(s) 259
MalI GATC 3 cut(s) 66, 71, 132
MboI GATC 3 cut(s) 64, 69, 130
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 142, 181
MnlI CCTC 3 cut(s) 44, 148, 198
MseI TTAA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 18, 84
NdeII GATC 3 cut(s) 64, 69, 130
NlaIII CATG 1 cut(s) 223
NspV TTCGAA 2 cut(s) 179, 214
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 3 cut(s) 110, 211, 216
PkrI GCNGC 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 44
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 3 cut(s) 64, 69, 130
SduI GDGCHC 1 cut(s) 192
SetI ASST 2 cut(s) 36, 159
SfaNI GCATC 2 cut(s) 229, 243
SfuI TTCGAA 2 cut(s) 179, 214
Sse9I AATT 2 cut(s) 142, 181
SsiI CCGC 2 cut(s) 51, 58
SspMI CTAG 1 cut(s) 259
TaqI TCGA 2 cut(s) 179, 214
TasI AATT 2 cut(s) 142, 181
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 3 cut(s) 110, 211, 216
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 1 cut(s) 99
VneI GTGCAC 1 cut(s) 188
VspI ATTAAT 1 cut(s) 44
XmiI GTMKAC 2 cut(s) 5, 150
XspI CTAG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.