Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

13276310 .. 13276918

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1162700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGACATCTCTCTCCTATACGACACCGTTACAGTCGCCACCACCGCCCAGGGCCTAGGGTTCGCCAAGTTCCTAACCCGTCACCATGACCTCACCTCCAACAATCAAATTTCCGTCACCGACAATCATACCGATCAATCCTCGCCGTCCATTGGAGTCCCCCAGATCTCCGCCGGTGTTTTCCCCTTCGACGCTGTTGCTCCGCCGCGTGCCCGGCCCAACTCTACCAGAACCGCAACCCGAACCCTCCTTCGCAAAAAACGTCGCGCCAGACGGAGATCGTCGGGCGGCGACGATTCTAACGATGGAGGCGAGGAAGATGGCGGGTTTTTCGGCGGAGATGGTCCGTTTTTCAATGGAGGGTGGGGCGGCAGTGGAGGCGGGGGCGGGGGTTGGAATTTCGATAGGTTTGGAGGGAATAGTTGGGATGAGTCTTCGTCGTCCTCGCCGTCCGATCCGGCTTTCGATTTCGTCTACGAGGTGATGTGTTGGATTGCGCTTTCGAATTGCGTGCACTTCGCGTTCAAGAGGGTGATTCAAATTGTGGCGGATGGGTTGGGGGATACTGACCGAGAGAAGGTGCCCATGAGATTGACTTCGGTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

21.66

Weight (kDa)

5.77

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	3 cut(s)	208, 267, 521
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	2 cut(s)	108, 397
AfiI	CCNNNNNNNGG	2 cut(s)	152, 577
AgsI	TTSAA	3 cut(s)	355, 526, 539
AjnI	CCWGG	1 cut(s)	48
Alw21I	GWGCWC	1 cut(s)	516
Alw44I	GTGCAC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	2 cut(s)	52, 215
ApaLI	GTGCAC	1 cut(s)	512
ApoI	RAATTY	2 cut(s)	108, 397
AspA2I	CCTAGG	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	269, 499
AspS9I	GGNCC	3 cut(s)	52, 216, 344
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	5 cut(s)	74, 85, 109, 493, 544
AsuII	TTCGAA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	344
AvrII	CCTAGG	1 cut(s)	55
BaeGI	GKGCMC	3 cut(s)	214, 516, 585
BanI	GGYRCC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	516
BccI	CCATC	4 cut(s)	299, 314, 335, 545
BceAI	ACGGC	2 cut(s)	130, 433
BcgI	CGANNNNNNTGC	4 cut(s)	179, 213, 493, 527
BciT130I	CCWGG	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	214
BfaI	CTAG	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	3 cut(s)	206, 289, 370
BlnI	CCTAGG	1 cut(s)	55
BlsI	GCNGC	3 cut(s)	207, 290, 371
Bme1390I	CCNGG	2 cut(s)	50, 214
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	52, 216, 344
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	50, 214
BoxI	GACNNNNGTC	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	214
BsaJI	CCNNGG	3 cut(s)	48, 49, 55
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 577
Bse118I	RCCGGY	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	3 cut(s)	48, 49, 55
BseGI	GGATG	2 cut(s)	433, 556
BseLI	CCNNNNNNNGG	2 cut(s)	152, 577
BseSI	GKGCMC	3 cut(s)	214, 516, 585
Bsh1236I	CGCG	3 cut(s)	208, 267, 521
BshFI	GGCC	2 cut(s)	54, 217
BshNI	GGYRCC	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	3 cut(s)	174, 214, 458
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	152, 577
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	54, 217
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	3 cut(s)	214, 516, 585
Bsp143I	GATC	4 cut(s)	133, 165, 278, 454
BspANI	GGCC	2 cut(s)	54, 217
BspFNI	CGCG	3 cut(s)	208, 267, 521
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	449
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	580
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	48, 49, 55
BssMI	GATC	4 cut(s)	133, 165, 278, 454
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	28, 34
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	210, 512
BstF5I	GGATG	2 cut(s)	433, 556
BstFNI	CGCG	3 cut(s)	208, 267, 521
BstHHI	GCGC	2 cut(s)	269, 499
BstKTI	GATC	4 cut(s)	136, 168, 281, 457
BstMBI	GATC	4 cut(s)	133, 165, 278, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 214, 378
BstNI	CCWGG	1 cut(s)	50
BstPAI	GACNNNNGTC	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	48, 212
BstSLI	GKGCMC	3 cut(s)	214, 516, 585
BstUI	CGCG	3 cut(s)	208, 267, 521
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	54, 217
BtsCI	GGATG	2 cut(s)	433, 556
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	210, 512
CfoI	GCGC	2 cut(s)	269, 499
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	52, 216, 344
CseI	GACGC	1 cut(s)	200
CviAII	CATG	2 cut(s)	86, 586
CviJI	RGCY	3 cut(s)	54, 217, 461
CviKI_1	RGCY	3 cut(s)	54, 217, 461
DpnI	GATC	4 cut(s)	135, 167, 280, 456
DpnII	GATC	4 cut(s)	133, 165, 278, 454
EciI	GGCGGA	4 cut(s)	160, 192, 351, 563
Eco130I	CCWWGG	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	2 cut(s)	89, 589
FaiI	YATR	4 cut(s)	19, 87, 129, 587
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	85, 585
FauI	CCCGC	3 cut(s)	317, 374, 380
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	3 cut(s)	206, 289, 370
FokI	GGATG	2 cut(s)	440, 563
Fsp4HI	GCNGC	3 cut(s)	206, 289, 370
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	2 cut(s)	268, 498
GluI	GCNGC	3 cut(s)	206, 289, 370
HaeIII	GGCC	2 cut(s)	54, 217
HapII	CCGG	3 cut(s)	174, 214, 458
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	269, 499
Hin1II	CATG	2 cut(s)	89, 589
Hin6I	GCGC	2 cut(s)	267, 497
HinP1I	GCGC	2 cut(s)	267, 497
HinfI	GANTC	4 cut(s)	156, 296, 431, 535
HpaII	CCGG	3 cut(s)	174, 214, 458
HphI	GGTGA	5 cut(s)	74, 85, 109, 493, 544
Hpy166II	GTNNAC	2 cut(s)	475, 514
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	2 cut(s)	475, 514
Hpy99I	CGWCG	5 cut(s)	194, 267, 286, 296, 442
HpyAV	CCTTC	3 cut(s)	196, 260, 571
HpyCH4III	ACNGT	2 cut(s)	28, 34
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 214, 378
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	89, 589
HspAI	GCGC	2 cut(s)	267, 497
Kzo9I	GATC	4 cut(s)	133, 165, 278, 454
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	8 cut(s)	35, 62, 176, 187, 227, 241, 283, 471
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	3 cut(s)	28, 80, 115
MalI	GATC	4 cut(s)	135, 167, 280, 456
MboI	GATC	4 cut(s)	133, 165, 278, 454
MboII	GAAGA	2 cut(s)	329, 426
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	3 cut(s)	214, 516, 585
MluCI	AATT	4 cut(s)	108, 397, 505, 540
MlyI	GAGTC	2 cut(s)	165, 440
MmeI	TCCRAC	3 cut(s)	123, 374, 470
MspI	CCGG	3 cut(s)	174, 214, 458
MspR9I	CCNGG	2 cut(s)	50, 214
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	3 cut(s)	208, 267, 521
MwoI	GCNNNNNNNGC	3 cut(s)	44, 214, 378
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	4 cut(s)	133, 165, 278, 454
NlaIII	CATG	2 cut(s)	89, 589
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	2 cut(s)	80, 115
NspV	TTCGAA	1 cut(s)	503
PasI	CCCWGGG	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	4 cut(s)	259, 300, 309, 446
PfeI	GAWTC	2 cut(s)	296, 535
PkrI	GCNGC	3 cut(s)	207, 290, 371
PleI	GAGTC	2 cut(s)	164, 439
PpsI	GAGTC	2 cut(s)	164, 439
PshAI	GACNNNNGTC	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	3 cut(s)	52, 216, 344
PsuI	RGATCY	1 cut(s)	165
SatI	GCNGC	3 cut(s)	206, 289, 370
Sau3AI	GATC	4 cut(s)	133, 165, 278, 454
Sau96I	GGNCC	3 cut(s)	52, 216, 344
SchI	GAGTC	2 cut(s)	165, 440
ScrFI	CCNGG	2 cut(s)	50, 214
SduI	GDGCHC	3 cut(s)	214, 516, 585
SetI	ASST	6 cut(s)	93, 98, 265, 410, 483, 582
SfuI	TTCGAA	1 cut(s)	503
SgrAI	CRCCGGYG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	4 cut(s)	108, 397, 505, 540
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	48, 212
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	28, 34
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	4 cut(s)	189, 402, 465, 503
TaqII	GACCGA	2 cut(s)	585, 589
TasI	AATT	4 cut(s)	108, 397, 505, 540
TauI	GCSGC	3 cut(s)	208, 291, 372
TfiI	GAWTC	2 cut(s)	296, 535
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	80, 115
Tsp45I	GTSAC	2 cut(s)	80, 115
TspGWI	ACGGA	3 cut(s)	103, 289, 336
TspRI	CASTG	1 cut(s)	379
VneI	GTGCAC	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	2 cut(s)	108, 397
XmaJI	CCTAGG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.