Rh7DG369500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001308
Physical Location & Seq
Forward (+)
49986073 .. 49987142
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG369500.1

Sequence Viewer

Length: 273 bp
ATGTCCGGAAGGCATCTGAATCGGAGAATGGTTGAGTTGTGCTTTGTACTCGATTTGCGAGATTTTGCTATCACCGACTTGGCGCAAATCGCAGTCGCTCAGAGATTTGATAGGCCTGTGCTCGTTGATCACCTACTCCGATTGTATTTCCATCACCGTCAGCAACACCTCATCCAGGTTCGTAGTGTGATGTGGTATACATTGTGTTGGATGTCACAGGTACTAGCACTTATGCTGGTGTGCAACCAGTCAACCACTATCAAAACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.78

Weight (kDa)

9.41

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 5
AfaI GTAC 2 cut(s) 48, 222
AfiI CCNNNNNNNGG 1 cut(s) 175
AjnI CCWGG 1 cut(s) 174
Alw21I GWGCWC 1 cut(s) 123
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 85
AsuHPI GGTGA 3 cut(s) 64, 122, 146
Bbv12I GWGCWC 1 cut(s) 123
BccI CCATC 1 cut(s) 159
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 127
BfaI CTAG 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 247
BseAI TCCGGA 1 cut(s) 5
BseBI CCWGG 1 cut(s) 176
BseGI GGATG 2 cut(s) 171, 216
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 247
BshFI GGCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 123
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 112
BspEI TCCGGA 1 cut(s) 5
BsrI ACTGG 1 cut(s) 247
BssMI GATC 1 cut(s) 127
BssNAI GTATAC 1 cut(s) 198
Bst1107I GTATAC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 99
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 171, 216
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstZ17I GTATAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 2 cut(s) 171, 216
CfoI GCGC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 47, 221
CviJI RGCY 1 cut(s) 115
CviKI_1 RGCY 1 cut(s) 115
CviQI GTAC 2 cut(s) 47, 221
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco147I AGGCCT 1 cut(s) 115
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 174
FaiI YATR 3 cut(s) 198, 233, 268
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 1 cut(s) 197
FokI GGATG 2 cut(s) 158, 223
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 115
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 85
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 6
HphI GGTGA 3 cut(s) 64, 122, 146
Hpy166II GTNNAC 2 cut(s) 198, 252
Hpy188I TCNGA 4 cut(s) 18, 24, 102, 140
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 2 cut(s) 198, 252
HpyAV CCTTC 1 cut(s) 3
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 99
HspAI GCGC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 7 cut(s) 19, 129, 161, 188, 203, 221, 260
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 213
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 1 cut(s) 179
MroI TCCGGA 1 cut(s) 5
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 213
PceI AGGCCT 1 cut(s) 115
PfeI GAWTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
RsaI GTAC 2 cut(s) 48, 222
RsaNI GTAC 2 cut(s) 47, 221
Sau3AI GATC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 123
SetI ASST 4 cut(s) 135, 171, 180, 222
SfaNI GCATC 1 cut(s) 22
SseBI AGGCCT 1 cut(s) 115
SspMI CTAG 1 cut(s) 224
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 51
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 1 cut(s) 19
TseFI GTSAC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 197
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.