Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

19237732 .. 19251626

Gene Structure 13895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCGTCGGCGAGTAGGCAAGCTTCTAGCCATCACCGGACGACGTGGAGGTCGGCTTTGACTCGTCGGAGACCGGAAAGCATAATAGTGGTGGAGGTGAGCGCGGTGGTGCTTAGAGACGTCGATTCTGTGCCCACCTACTTGAAGACAAGACCGGAATCAATCCACCATTTCTTTCTATCTTCGGACTTAGTCTCTGTTTCTTTACGGAGGGGTAGAGAGAAAAGAGAGGAGGGTCAAAGCGGCGGTGGTGGTGGATTAAGTATTAAGCGTAGTGAAGAACTGAAGCGAGCTGATGCAATGATGCTAATGTACGCCTATGATCAGCCAATGACGCTTACTCGTATCTCTAGCTTCGGCTCCTTGAGCTTCGTCGATTGGAGTACACTAACTCGTTGCTCCCATGTCATACATCAATTTTCAAAGGTGTTCATGATCACGATAACTCGCCGTATTCATGTCACACGATGGCGAACGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04137 ko04214 map04137 map04214

Pfam Domains

Protein Families

EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

160

Amino Acids

18.31

Weight (kDa)

10.78

Isoelectric Point (pI)

68.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AatII	GACGTC	1 cut(s)	123
AccII	CGCG	1 cut(s)	104
AciI	CCGC	3 cut(s)	104, 243, 246
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	2 cut(s)	5, 120
AfaI	GTAC	2 cut(s)	314, 385
AgsI	TTSAA	2 cut(s)	145, 423
AjiI	CACGTC	1 cut(s)	45
AluBI	AGCT	4 cut(s)	23, 293, 354, 369
AluI	AGCT	4 cut(s)	23, 293, 354, 369
Alw26I	GTCTC	3 cut(s)	64, 111, 199
AspLEI	GCGC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	26, 109
BaeGI	GKGCMC	1 cut(s)	135
BarI	GAAGNNNNNNTAC	2 cut(s)	7, 39
BbsI	GAAGAC	1 cut(s)	152
BccI	CCATC	2 cut(s)	39, 462
BceAI	ACGGC	1 cut(s)	435
BclI	TGATCA	2 cut(s)	322, 435
BcoDI	GTCTC	3 cut(s)	64, 111, 199
BfaI	CTAG	3 cut(s)	27, 351, 481
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
BmgBI	CACGTC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	361
BmsI	GCATC	2 cut(s)	286, 294
BpiI	GAAGAC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	385
BsaHI	GRCGYC	2 cut(s)	5, 120
BsaI	GGTCTC	1 cut(s)	64
BsaWI	WCCGGW	3 cut(s)	36, 73, 154
Bse3DI	GCAATG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	104
BsiSI	CCGG	3 cut(s)	37, 74, 155
BsmAI	GTCTC	3 cut(s)	64, 111, 199
BsmBI	CGTCTC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	322, 435
BspACI	CCGC	3 cut(s)	104, 243, 246
BspFNI	CGCG	1 cut(s)	104
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	306
BssMI	GATC	2 cut(s)	322, 435
BssNI	GRCGYC	2 cut(s)	5, 120
BstACI	GRCGYC	2 cut(s)	5, 120
BstC8I	GCNNGC	2 cut(s)	21, 291
BstDEI	CTNAG	2 cut(s)	113, 190
BstFNI	CGCG	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	325, 438
BstMAI	GTCTC	3 cut(s)	64, 111, 199
BstMBI	GATC	2 cut(s)	322, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 366
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	152
BtrI	CACGTC	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	21, 291
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	1 cut(s)	104
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	313, 384
CviAII	CATG	3 cut(s)	404, 433, 458
CviJI	RGCY	8 cut(s)	23, 30, 56, 293, 328, 354, 360, 369
CviKI_1	RGCY	8 cut(s)	23, 30, 56, 293, 328, 354, 360, 369
CviQI	GTAC	2 cut(s)	313, 384
DdeI	CTNAG	2 cut(s)	113, 190
DpnI	GATC	2 cut(s)	324, 437
DpnII	GATC	2 cut(s)	322, 435
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	3 cut(s)	407, 436, 461
FaiI	YATR	6 cut(s)	83, 321, 405, 410, 434, 459
FatI	CATG	3 cut(s)	403, 432, 457
FbaI	TGATCA	2 cut(s)	322, 435
Fnu4HI	GCNGC	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	3 cut(s)	27, 351, 481
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	244
HapII	CCGG	3 cut(s)	37, 74, 155
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	2 cut(s)	5, 120
Hin1II	CATG	3 cut(s)	407, 436, 461
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	3 cut(s)	61, 125, 158
HpaII	CCGG	3 cut(s)	37, 74, 155
HphI	GGTGA	2 cut(s)	26, 109
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	2 cut(s)	69, 187
Hpy188III	TCNNGA	2 cut(s)	433, 439
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	5 cut(s)	10, 46, 69, 125, 377
HpyCH4IV	ACGT	2 cut(s)	44, 120
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 366
HpyF3I	CTNAG	2 cut(s)	113, 190
HpySE526I	ACGT	2 cut(s)	44, 120
Hsp92I	GRCGYC	2 cut(s)	5, 120
Hsp92II	CATG	3 cut(s)	407, 436, 461
HspAI	GCGC	1 cut(s)	102
Ksp22I	TGATCA	2 cut(s)	322, 435
Kzo9I	GATC	2 cut(s)	322, 435
LmnI	GCTCC	2 cut(s)	365, 404
LpnPI	CCDG	3 cut(s)	50, 87, 168
LweI	GCATC	2 cut(s)	286, 294
MaeI	CTAG	3 cut(s)	27, 351, 481
MaeII	ACGT	2 cut(s)	44, 120
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	2 cut(s)	324, 437
MboI	GATC	2 cut(s)	322, 435
MboII	GAAGA	3 cut(s)	157, 174, 290
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	5 cut(s)	42, 88, 204, 223, 226
MseI	TTAA	2 cut(s)	260, 267
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	3 cut(s)	37, 74, 155
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	334, 366
NdeII	GATC	2 cut(s)	322, 435
NlaIII	CATG	3 cut(s)	407, 436, 461
NlaIV	GGNNCC	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	460
PagI	TCATGA	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	125, 158
PflFI	GACNNNGTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	191
RsaI	GTAC	2 cut(s)	314, 385
RsaNI	GTAC	2 cut(s)	313, 384
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	260, 267
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	2 cut(s)	322, 435
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	2 cut(s)	286, 294
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	3 cut(s)	104, 243, 246
SspMI	CTAG	3 cut(s)	27, 351, 481
TaiI	ACGT	2 cut(s)	47, 123
TaqI	TCGA	2 cut(s)	123, 375
TasI	AATT	1 cut(s)	416
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	2 cut(s)	125, 158
Tru1I	TTAA	2 cut(s)	260, 267
Tru9I	TTAA	2 cut(s)	260, 267
TseFI	GTSAC	1 cut(s)	460
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	2 cut(s)	421, 446
TspGWI	ACGGA	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	191
XspI	CTAG	3 cut(s)	27, 351, 481
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.