Rroxscaffold_6G00414570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001308
Physical Location & Seq
Reverse (-)
36900587 .. 36902265
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414570.1

Sequence Viewer

Length: 225 bp
ATGCCTAACGAAAATCCAAAAAGATTTTGCTTGTCGCCGACTTGGCGCAAATCGCGATCGCTCGGAGATCCGATAGGCCTATGCTCGTTGATCACCTCCTCCGATTGTATTTCCATCACCGTCGGTGACACCTCATCCGAGTTAGTTGTACTTATCGATTTCGATGTAAATCCCTATGCAACCGTAAACGGAGCTCCGTTTGATTTTGATTTTGTGGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.09

Weight (kDa)

4.16

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 55
AclWI GGATC 1 cut(s) 62
AfaI GTAC 1 cut(s) 150
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 196
AlwI GGATC 1 cut(s) 62
AoxI GGCC 1 cut(s) 76
AsiSI GCGATCGC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 48
AsuHPI GGTGA 3 cut(s) 85, 109, 137
BanII GRGCYC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 196
BccI CCATC 1 cut(s) 122
BclI TGATCA 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 156
BseGI GGATG 2 cut(s) 134, 223
BseJI GATNNNNATC 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 78
BshVI ATCGAT 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 196
BsnI GGCC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 3 cut(s) 56, 67, 90
Bsp68I TCGCGA 1 cut(s) 55
BspANI GGCC 1 cut(s) 78
BspDI ATCGAT 1 cut(s) 156
BspFNI CGCG 1 cut(s) 55
BspPI GGATC 1 cut(s) 62
BssMI GATC 3 cut(s) 56, 67, 90
Bst4CI ACNGT 2 cut(s) 121, 184
BstF5I GGATG 2 cut(s) 134, 223
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 3 cut(s) 59, 70, 93
BstMBI GATC 3 cut(s) 56, 67, 90
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 2 cut(s) 43, 52
BstUI CGCG 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 1 cut(s) 78
BsuTUI ATCGAT 1 cut(s) 156
BtsCI GGATG 2 cut(s) 134, 223
BtuMI TCGCGA 1 cut(s) 55
CfoI GCGC 1 cut(s) 48
ClaI ATCGAT 1 cut(s) 156
Csp6I GTAC 1 cut(s) 149
CviJI RGCY 2 cut(s) 78, 194
CviKI_1 RGCY 2 cut(s) 78, 194
CviQI GTAC 1 cut(s) 149
DpnI GATC 3 cut(s) 58, 69, 92
DpnII GATC 3 cut(s) 56, 67, 90
Ecl136II GAGCTC 1 cut(s) 194
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 196
FaiI YATR 2 cut(s) 82, 177
FbaI TGATCA 1 cut(s) 90
FokI GGATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 196
GlaI GCGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 78
HhaI GCGC 1 cut(s) 48
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HphI GGTGA 3 cut(s) 85, 109, 137
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 4 cut(s) 65, 72, 103, 139
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 121, 184
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 52
HspAI GCGC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 3 cut(s) 56, 67, 90
LmnI GCTCC 2 cut(s) 191, 199
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 58, 69, 92
MboI GATC 3 cut(s) 56, 67, 90
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 196
MnlI CCTC 3 cut(s) 106, 109, 142
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 43, 52
NdeII GATC 3 cut(s) 56, 67, 90
NmuCI GTSAC 1 cut(s) 125
NruI TCGCGA 1 cut(s) 55
PceI AGGCCT 1 cut(s) 78
Ple19I CGATCG 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 196
PsuI RGATCY 1 cut(s) 67
PvuI CGATCG 1 cut(s) 59
RgaI GCGATCGC 1 cut(s) 59
RruI TCGCGA 1 cut(s) 55
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SacI GAGCTC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 56, 67, 90
SduI GDGCHC 1 cut(s) 196
SetI ASST 3 cut(s) 98, 134, 196
SfaAI GCGATCGC 1 cut(s) 59
SgeI CNNG 6 cut(s) 43, 54, 66, 74, 97, 151
SgfI GCGATCGC 1 cut(s) 59
SseBI AGGCCT 1 cut(s) 78
SstI GAGCTC 1 cut(s) 196
StuI AGGCCT 1 cut(s) 78
TaaI ACNGT 2 cut(s) 121, 184
TaqI TCGA 2 cut(s) 156, 162
TatI WGTACW 1 cut(s) 148
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspGWI ACGGA 2 cut(s) 186, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.