Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Reverse (-)

694737 .. 696931

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG010400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAATCAGATTTACTTTACATGTCTTTTTCCACAAATATGCTTAATGGGACGATACCTGCTTGGATCCTTCTGGCAGTCCAAACTAGGATCCCGGCCGATCAAAACGACAGCGTCACTGACCTTCAACCCGACGACTCTGAGCAGCACGAAGGTCTCGAGAATGCAAGGGCTGCTGGTGACGAGGTTCTTGATGATGAGGTAGACCTGGCTGGGCTTGAAATCCTTGACAGAAAAAGGAGAGAACTTGACGAGTTAAAGCTTATCGGTGGAGTGATTGACCCAGGAGACGACATCGGAGACGAGTTGCTCGGTCTTGAGGCTCGAGTCACGGCTACCCCACTCGTTCTCGACGACCAATTGAAGCGTCGACCACCGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

127

Amino Acids

14.02

Weight (kDa)

4.14

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccI	GTMKAC	2 cut(s)	204, 370
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	4 cut(s)	61, 74, 85, 98
AcoI	YGGCCR	1 cut(s)	96
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	128, 221, 364
AjnI	CCWGG	2 cut(s)	207, 283
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw26I	GTCTC	3 cut(s)	161, 282, 294
AlwI	GGATC	4 cut(s)	61, 74, 85, 98
Ama87I	CYCGRG	2 cut(s)	158, 324
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	145, 173
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	2 cut(s)	158, 324
BamHI	GGATCC	2 cut(s)	66, 90
BbvI	GCAGC	2 cut(s)	157, 160
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	2 cut(s)	209, 285
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	3 cut(s)	161, 282, 294
BfaI	CTAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	2 cut(s)	146, 174
BlsI	GCNGC	2 cut(s)	147, 175
Bme1390I	CCNGG	3 cut(s)	95, 209, 285
BmeT110I	CYCGRG	2 cut(s)	158, 324
BmiI	GGNNCC	2 cut(s)	68, 92
BmrFI	CCNGG	3 cut(s)	95, 209, 285
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	283
BseBI	CCWGG	2 cut(s)	209, 285
BseDI	CCNNGG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	132
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	157, 160
BseYI	CCCAGC	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	2 cut(s)	158, 324
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	64
BsmAI	GTCTC	3 cut(s)	161, 282, 294
BsmBI	CGTCTC	2 cut(s)	282, 294
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	158, 324
Bsp143I	GATC	3 cut(s)	66, 90, 100
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	68, 92
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	4 cut(s)	61, 74, 85, 98
BspTNI	GGTCTC	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	3 cut(s)	66, 90, 100
Bst2UI	CCWGG	2 cut(s)	209, 285
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	141
BstKTI	GATC	3 cut(s)	69, 93, 103
BstMAI	GTCTC	3 cut(s)	161, 282, 294
BstMBI	GATC	3 cut(s)	66, 90, 100
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	2 cut(s)	209, 285
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	93, 207, 283
BstV1I	GCAGC	2 cut(s)	157, 160
BstX2I	RGATCY	2 cut(s)	66, 90
BstYI	RGATCY	2 cut(s)	66, 90
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	67
CseI	GACGC	2 cut(s)	103, 356
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	7 cut(s)	98, 173, 212, 217, 262, 323, 335
CviKI_1	RGCY	7 cut(s)	98, 173, 212, 217, 262, 323, 335
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	3 cut(s)	68, 92, 102
DpnII	GATC	3 cut(s)	66, 90, 100
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
EclXI	CGGCCG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	161
Eco52I	CGGCCG	1 cut(s)	96
Eco88I	CYCGRG	2 cut(s)	158, 324
EcoRII	CCWGG	2 cut(s)	207, 283
Esp3I	CGTCTC	2 cut(s)	282, 294
FaeI	CATG	1 cut(s)	25
FaiI	YATR	2 cut(s)	23, 41
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	1 cut(s)	21
FblI	GTMKAC	2 cut(s)	204, 370
Fnu4HI	GCNGC	2 cut(s)	146, 174
Fsp4HI	GCNGC	2 cut(s)	146, 174
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	2 cut(s)	146, 174
GsaI	CCCAGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	2 cut(s)	103, 356
Hin1II	CATG	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	371
HindII	GTYRAC	1 cut(s)	371
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	2 cut(s)	137, 327
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	205, 371
Hpy188I	TCNGA	3 cut(s)	10, 142, 299
Hpy188III	TCNNGA	5 cut(s)	158, 160, 191, 317, 350
Hpy8I	GTNNAC	2 cut(s)	205, 371
Hpy99I	CGWCG	3 cut(s)	137, 356, 372
HpyAV	CCTTC	3 cut(s)	80, 134, 146
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	66, 90, 100
LpnPI	CCDG	9 cut(s)	59, 72, 108, 162, 194, 198, 221, 270, 297
Lsp1109I	GCAGC	2 cut(s)	157, 160
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	115, 179, 328
MalI	GATC	3 cut(s)	68, 92, 102
MboI	GATC	3 cut(s)	66, 90, 100
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	2 cut(s)	66, 90
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	2 cut(s)	131, 336
MnlI	CCTC	3 cut(s)	178, 193, 313
MseI	TTAA	2 cut(s)	45, 257
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	3 cut(s)	95, 209, 285
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	2 cut(s)	209, 285
MwoI	GCNNNNNNNGC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	3 cut(s)	66, 90, 100
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	68, 92
NmuCI	GTSAC	3 cut(s)	115, 179, 328
NspI	RCATGY	1 cut(s)	25
PaeR7I	CTCGAG	2 cut(s)	158, 324
PciI	ACATGT	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 351
PctI	GAATGC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	147, 175
PleI	GAGTC	2 cut(s)	131, 335
PpsI	GAGTC	2 cut(s)	131, 335
PscI	ACATGT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	207, 283
PspFI	CCCAGC	1 cut(s)	212
PspGI	CCWGG	2 cut(s)	207, 283
PspN4I	GGNNCC	2 cut(s)	68, 92
PspXI	VCTCGAGB	1 cut(s)	324
PsuI	RGATCY	2 cut(s)	66, 90
PsyI	GACNNNGTC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	45, 257
SatI	GCNGC	2 cut(s)	146, 174
Sau3AI	GATC	3 cut(s)	66, 90, 100
SchI	GAGTC	2 cut(s)	131, 336
ScrFI	CCNGG	3 cut(s)	95, 209, 285
SetI	ASST	7 cut(s)	61, 126, 157, 189, 204, 210, 264
Sfr274I	CTCGAG	2 cut(s)	158, 324
SlaI	CTCGAG	2 cut(s)	158, 324
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	3 cut(s)	158, 317, 324
SmoI	CTYRAG	3 cut(s)	158, 317, 324
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	93, 207, 283
TaqI	TCGA	4 cut(s)	159, 325, 351, 370
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	45, 257
Tru9I	TTAA	2 cut(s)	45, 257
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	3 cut(s)	115, 179, 328
TseI	GCWGC	2 cut(s)	145, 173
Tsp45I	GTSAC	3 cut(s)	115, 179, 328
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	124
Tth111I	GACNNNGTC	1 cut(s)	113
XceI	RCATGY	1 cut(s)	25
XhoI	CTCGAG	2 cut(s)	158, 324
XmiI	GTMKAC	2 cut(s)	204, 370
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.