Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

863863 .. 865068

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG005500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAGAACCTCGAGCTTCCGATCATTGAGCCCGGCGGCCAGGAGCTCAAAATCGAAGCTGAGTCGCTCTCCTCGAGCCATACTCCAATATTTCGTAGTCTCAATGTCCGGAAGGCATTTGAATCAGAGAATGAGTCTCTCGGAGATCTGATAGGCCTGTGCTCGTTGATCACCTCCTCCGATTATATTCCCATCACCGTAATCGACACCTCATCCAGTGAAGAACTGAAGAAAGCTGATGTAGTGATGCTAATGTACGCCTATAATCAGCCAATGACACTTACTCATATCTCTAGCTTCTGGCTCCCTGAGCTTCGTCGGTTGGAGGTGAATGTACTAGTAATTTTGGTTGGATGCAAGTTGGATTTGAGAGACGAGCATGGAGCAGGTGATGACACCAATCATGCAGTGGTAAATGTGACAGAAATAGGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04137 ko04214 map04137 map04214

Pfam Domains

Protein Families

EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

145

Amino Acids

15.98

Weight (kDa)

4.64

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	108
AciI	CCGC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	2 cut(s)	257, 336
AgsI	TTSAA	1 cut(s)	122
AhlI	ACTAGT	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	6 cut(s)	16, 46, 59, 236, 297, 313
AluI	AGCT	6 cut(s)	16, 46, 59, 236, 297, 313
Alw21I	GWGCWC	2 cut(s)	48, 164
Alw26I	GTCTC	3 cut(s)	104, 141, 366
Ama87I	CYCGRG	2 cut(s)	11, 73
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	2 cut(s)	37, 154
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	4 cut(s)	163, 187, 340, 401
AvaI	CYCGRG	2 cut(s)	11, 73
BanII	GRGCYC	2 cut(s)	33, 48
Bbv12I	GWGCWC	2 cut(s)	48, 164
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	41
BclI	TGATCA	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	3 cut(s)	104, 141, 366
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	2 cut(s)	294, 338
BfuAI	ACCTGC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
Bme1390I	CCNGG	2 cut(s)	33, 41
BmeT110I	CYCGRG	2 cut(s)	11, 73
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	2 cut(s)	33, 41
BmsI	GCATC	2 cut(s)	237, 344
BplI	GAGNNNNNCTC	4 cut(s)	53, 85, 67, 99
Bpu10I	CCTNAGC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	212, 359
BseMII	CTCAG	2 cut(s)	51, 300
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	2 cut(s)	61, 166
BshFI	GGCC	2 cut(s)	39, 156
BsiHKAI	GWGCWC	2 cut(s)	48, 164
BsiHKCI	CYCGRG	2 cut(s)	11, 73
BsiSI	CCGG	2 cut(s)	33, 109
BsmAI	GTCTC	3 cut(s)	104, 141, 366
BsmBI	CGTCTC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	39, 156
BsoBI	CYCGRG	2 cut(s)	11, 73
Bsp1286I	GDGCHC	3 cut(s)	33, 48, 164
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	21, 145, 168
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	39, 156
BspCNI	CTCAG	2 cut(s)	52, 301
BspEI	TCCGGA	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	305
BspMI	ACCTGC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	21, 145, 168
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	60, 309
BstF5I	GGATG	2 cut(s)	212, 359
BstKTI	GATC	3 cut(s)	24, 148, 171
BstMAI	GTCTC	3 cut(s)	104, 141, 366
BstMBI	GATC	3 cut(s)	21, 145, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	31, 39
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	39, 156
BtsCI	GGATG	2 cut(s)	212, 359
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	223, 414
BveI	ACCTGC	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	256, 335
CviAII	CATG	2 cut(s)	380, 404
CviQI	GTAC	2 cut(s)	256, 335
DdeI	CTNAG	2 cut(s)	60, 309
DpnI	GATC	3 cut(s)	23, 147, 170
DpnII	GATC	3 cut(s)	21, 145, 168
EaeI	YGGCCR	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	156
Eco24I	GRGCYC	2 cut(s)	33, 48
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	2 cut(s)	11, 73
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	33, 48
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	2 cut(s)	383, 407
FaiI	YATR	6 cut(s)	81, 186, 264, 288, 381, 405
FatI	CATG	2 cut(s)	379, 403
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	37
FokI	GGATG	2 cut(s)	199, 366
FriOI	GRGCYC	2 cut(s)	33, 48
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	2 cut(s)	294, 338
GluI	GCNGC	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	39, 156
HapII	CCGG	2 cut(s)	33, 109
Hin1II	CATG	2 cut(s)	383, 407
HinfI	GANTC	3 cut(s)	62, 122, 134
HpaII	CCGG	2 cut(s)	33, 109
HphI	GGTGA	4 cut(s)	163, 187, 340, 401
Hpy188I	TCNGA	5 cut(s)	21, 127, 143, 150, 181
Hpy188III	TCNNGA	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	321
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	357, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	2 cut(s)	60, 309
Hsp92II	CATG	2 cut(s)	383, 407
Kpn2I	TCCGGA	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	21, 145, 168
LmnI	GCTCC	3 cut(s)	43, 309, 383
LpnPI	CCDG	9 cut(s)	26, 46, 53, 122, 170, 229, 286, 321, 372
LweI	GCATC	2 cut(s)	237, 344
MaeI	CTAG	2 cut(s)	294, 338
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	3 cut(s)	23, 147, 170
MboI	GATC	3 cut(s)	21, 145, 168
MboII	GAAGA	3 cut(s)	16, 233, 241
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	3 cut(s)	33, 48, 164
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	2 cut(s)	71, 143
MmeI	TCCRAC	3 cut(s)	303, 331, 342
MnlI	CCTC	7 cut(s)	20, 82, 184, 187, 220, 319, 425
MroI	TCCGGA	1 cut(s)	108
MspI	CCGG	2 cut(s)	33, 109
MspR9I	CCNGG	2 cut(s)	33, 41
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	21, 145, 168
NlaIII	CATG	2 cut(s)	383, 407
NlaIV	GGNNCC	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	418
PaeR7I	CTCGAG	2 cut(s)	11, 73
PaqCI	CACCTGC	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	38
PleI	GAGTC	2 cut(s)	70, 142
PpsI	GAGTC	2 cut(s)	70, 142
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	305
PspXI	VCTCGAGB	2 cut(s)	11, 73
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	2 cut(s)	257, 336
RsaNI	GTAC	2 cut(s)	256, 335
SacI	GAGCTC	1 cut(s)	48
SatI	GCNGC	1 cut(s)	37
Sau3AI	GATC	3 cut(s)	21, 145, 168
SchI	GAGTC	2 cut(s)	71, 143
ScrFI	CCNGG	2 cut(s)	33, 41
SduI	GDGCHC	3 cut(s)	33, 48, 164
SfaNI	GCATC	2 cut(s)	237, 344
Sfr274I	CTCGAG	2 cut(s)	11, 73
SlaI	CTCGAG	2 cut(s)	11, 73
SmlI	CTYRAG	2 cut(s)	11, 73
SmoI	CTYRAG	2 cut(s)	11, 73
SpeI	ACTAGT	1 cut(s)	337
Sse9I	AATT	1 cut(s)	342
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	1 cut(s)	36
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	2 cut(s)	294, 338
SstI	GAGCTC	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	31, 39
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	4 cut(s)	12, 54, 74, 204
TasI	AATT	1 cut(s)	342
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	2 cut(s)	223, 414
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	223, 414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XhoI	CTCGAG	2 cut(s)	11, 73
XspI	CTAG	2 cut(s)	294, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.