Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

28800541 .. 28816475

Gene Structure 15935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG250000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAGAACCTCGAGCTTCCGATCATCGACCCCAGCGGCCAGGAGCTCAAAATCAAAGCCGAGTCACTATCCTCGAGCCATACTCCAATATTTTGTAGTCTCAATGTCCGGAAGGCATCTGAATCGGAGAATGTAATTTTGGTTGGATGCAAGTTGGATTTGAGAGATGAGCATGATTCGATGAGCATGGAGCAAGTGTACGTCAACACCAATCATGCAGCGCGCCGGCCACCGTCGTCTGTCACCTCTTCGACCGTCATCTGCTTACCGCGCATTTCGGCTCTCCCCAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

98

Amino Acids

10.76

Weight (kDa)

6.82

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	223, 271
AccIII	TCCGGA	1 cut(s)	108
AciI	CCGC	2 cut(s)	36, 269
AcoI	YGGCCR	2 cut(s)	37, 227
AfaI	GTAC	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	2 cut(s)	16, 46
AluI	AGCT	2 cut(s)	16, 46
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	104
Ama87I	CYCGRG	2 cut(s)	11, 73
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	2 cut(s)	37, 227
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	3 cut(s)	223, 225, 273
AsuHPI	GGTGA	1 cut(s)	235
AvaI	CYCGRG	2 cut(s)	11, 73
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	104
BisI	GCNGC	2 cut(s)	37, 219
BlsI	GCNGC	2 cut(s)	38, 220
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	2 cut(s)	11, 73
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	125, 137
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bse118I	RCCGGY	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	152
BsePI	GCGCGC	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	32
Bsh1236I	CGCG	2 cut(s)	223, 271
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	39, 229
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	2 cut(s)	11, 73
BsiSI	CCGG	2 cut(s)	109, 226
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	39, 229
BsoBI	CYCGRG	2 cut(s)	11, 73
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	2 cut(s)	36, 269
BspANI	GGCC	2 cut(s)	39, 229
BspEI	TCCGGA	1 cut(s)	108
BspFNI	CGCG	2 cut(s)	223, 271
BsrFI	RCCGGY	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	225
BssHII	GCGCGC	1 cut(s)	221
BssMI	GATC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	234, 256
Bst6I	CTCTTC	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	223, 227
BstF5I	GGATG	1 cut(s)	152
BstFNI	CGCG	2 cut(s)	223, 271
BstHHI	GCGC	3 cut(s)	223, 225, 273
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	21
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	2 cut(s)	223, 271
BstV1I	GCAGC	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	39, 229
BtsCI	GGATG	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	223, 227
CfoI	GCGC	3 cut(s)	223, 225, 273
Cfr10I	RCCGGY	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	3 cut(s)	173, 187, 215
CviJI	RGCY	7 cut(s)	16, 39, 46, 59, 78, 229, 281
CviKI_1	RGCY	7 cut(s)	16, 39, 46, 59, 78, 229, 281
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EaeI	YGGCCR	2 cut(s)	37, 227
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
Eco88I	CYCGRG	2 cut(s)	11, 73
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	3 cut(s)	176, 190, 218
FaiI	YATR	4 cut(s)	81, 174, 188, 216
FatI	CATG	3 cut(s)	172, 186, 214
Fnu4HI	GCNGC	2 cut(s)	37, 219
FokI	GGATG	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	37, 219
GlaI	GCGC	3 cut(s)	222, 224, 272
GluI	GCNGC	2 cut(s)	37, 219
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	39, 229
HapII	CCGG	2 cut(s)	109, 226
HhaI	GCGC	3 cut(s)	223, 225, 273
Hin1II	CATG	3 cut(s)	176, 190, 218
Hin6I	GCGC	3 cut(s)	221, 223, 271
HinP1I	GCGC	3 cut(s)	221, 223, 271
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	3 cut(s)	62, 122, 176
HpaII	CCGG	2 cut(s)	109, 226
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	199, 205
Hpy188I	TCNGA	3 cut(s)	21, 121, 127
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	199, 205
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	234, 256
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	150, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	176, 190, 218
HspAI	GCGC	3 cut(s)	221, 223, 271
Kpn2I	TCCGGA	1 cut(s)	108
KroI	GCCGGC	1 cut(s)	225
KroNI	GCCGGC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	43, 190
LpnPI	CCDG	5 cut(s)	26, 46, 53, 122, 239
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	2 cut(s)	125, 137
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	63, 241
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	2 cut(s)	16, 240
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	124, 135
MnlI	CCTC	3 cut(s)	20, 82, 256
MroI	TCCGGA	1 cut(s)	108
MroNI	GCCGGC	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	36
MspI	CCGG	2 cut(s)	109, 226
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	2 cut(s)	223, 271
MwoI	GCNNNNNNNGC	1 cut(s)	270
NaeI	GCCGGC	1 cut(s)	227
NdeII	GATC	1 cut(s)	21
NgoMIV	GCCGGC	1 cut(s)	225
NlaIII	CATG	3 cut(s)	176, 190, 218
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	63, 241
PaeR7I	CTCGAG	2 cut(s)	11, 73
PauI	GCGCGC	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	122, 176
PkrI	GCNGC	2 cut(s)	38, 220
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	39
PspXI	VCTCGAGB	2 cut(s)	11, 73
PteI	GCGCGC	1 cut(s)	221
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	48
SatI	GCNGC	2 cut(s)	37, 219
Sau3AI	GATC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	5 cut(s)	12, 18, 48, 204, 248
SfaNI	GCATC	2 cut(s)	125, 137
Sfr274I	CTCGAG	2 cut(s)	11, 73
SlaI	CTCGAG	2 cut(s)	11, 73
SmlI	CTYRAG	2 cut(s)	11, 73
SmoI	CTYRAG	2 cut(s)	11, 73
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	2 cut(s)	36, 269
SspI	AATATT	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	234, 256
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	5 cut(s)	12, 27, 74, 179, 251
TasI	AATT	1 cut(s)	135
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	122, 176
TseFI	GTSAC	2 cut(s)	63, 241
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	2 cut(s)	63, 241
TspDTI	ATGAA	1 cut(s)	17
XhoI	CTCGAG	2 cut(s)	11, 73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.