RLG00000017192

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001308
Physical Location & Seq
Forward (+)
13983973 .. 13984476
504 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017192

Sequence Viewer

Length: 405 bp
ATGAAGAACCTCAAGCTTTCGATCATTGAGCTCGGCGGCCAAGAGCTCAAAATTGAATTTGAGTCGCTCCCCTCAATCCGTAATCTAATATTTCGTAGTCTCAATGTTTGGAAGGTGTCTGAATCAGAGAATCGCAGCGACAGCGGGGATCGGCTGAGATCTGAAGCATCCGATACTTTCAAACCAGCTCCTCCACGCGACTTCCGGCTTGGGCATCGCTGTCATGTCCTTCGTGTCTACTTGCTCAGCGAGCAGTTCTACAAACCTCGGTCCGATCTGGCCTTCAATTTTGTCTACGAGGTGATGGTTTGGATTGGGCTTTCGAATTGCGTGCACTTTGCTTTCAAGAGGATGATTCGAATCATGGCAGATGGATTAGATGATGCAAAGAGAATGATGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.69

Weight (kDa)

9.26

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 237, 294
AccII CGCG 1 cut(s) 198
AciI CCGC 2 cut(s) 36, 144
AclWI GGATC 1 cut(s) 156
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 183
AgsI TTSAA 4 cut(s) 56, 181, 286, 346
AluBI AGCT 4 cut(s) 16, 31, 46, 188
AluI AGCT 4 cut(s) 16, 31, 46, 188
Alw21I GWGCWC 3 cut(s) 33, 48, 336
Alw26I GTCTC 1 cut(s) 104
Alw44I GTGCAC 1 cut(s) 332
AlwI GGATC 1 cut(s) 156
AoxI GGCC 2 cut(s) 37, 279
ApaLI GTGCAC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 313
AsuII TTCGAA 2 cut(s) 323, 358
AvaII GGWCC 1 cut(s) 270
BaeGI GKGCMC 1 cut(s) 336
BanII GRGCYC 2 cut(s) 33, 48
Bbv12I GWGCWC 3 cut(s) 33, 48, 336
BbvI GCAGC 1 cut(s) 147
BccI CCATC 2 cut(s) 298, 365
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BcoDI GTCTC 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 401
BglII AGATCT 1 cut(s) 158
BisI GCNGC 2 cut(s) 37, 136
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 2 cut(s) 38, 137
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmsI GCATC 4 cut(s) 176, 223, 373, 387
Bpu1102I GCTNAGC 1 cut(s) 245
Bpu14I TTCGAA 2 cut(s) 323, 358
BsaBI GATNNNNATC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 167, 357
BseJI GATNNNNATC 1 cut(s) 359
BseMII CTCAG 2 cut(s) 146, 259
BseRI GAGGAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 39, 281
BsiHKAI GWGCWC 3 cut(s) 33, 48, 336
BsiSI CCGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 2 cut(s) 39, 281
Bsp119I TTCGAA 2 cut(s) 323, 358
Bsp1286I GDGCHC 3 cut(s) 33, 48, 336
Bsp143I GATC 4 cut(s) 21, 148, 158, 274
Bsp1720I GCTNAGC 1 cut(s) 245
BspACI CCGC 2 cut(s) 36, 144
BspANI GGCC 2 cut(s) 39, 281
BspCNI CTCAG 2 cut(s) 147, 258
BspFNI CGCG 1 cut(s) 198
BspPI GGATC 1 cut(s) 156
BspT104I TTCGAA 2 cut(s) 323, 358
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 4 cut(s) 21, 148, 158, 274
BstBI TTCGAA 2 cut(s) 323, 358
BstC8I GCNNGC 2 cut(s) 251, 332
BstDEI CTNAG 2 cut(s) 155, 245
BstF5I GGATG 2 cut(s) 167, 357
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 4 cut(s) 24, 151, 161, 277
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 4 cut(s) 21, 148, 158, 274
BstMWI GCNNNNNNNGC 2 cut(s) 141, 250
BstSFI CTRYAG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 336
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 2 cut(s) 39, 281
BtgZI GCGATG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 167, 357
Cac8I GCNNGC 2 cut(s) 251, 332
Cfr13I GGNCC 1 cut(s) 270
CpoI CGGWCCG 1 cut(s) 270
CspI CGGWCCG 1 cut(s) 270
CviAII CATG 2 cut(s) 224, 364
CviJI RGCY 9 cut(s) 16, 31, 39, 46, 154, 188, 208, 281, 319
CviKI_1 RGCY 9 cut(s) 16, 31, 39, 46, 154, 188, 208, 281, 319
DdeI CTNAG 2 cut(s) 155, 245
DpnI GATC 4 cut(s) 23, 150, 160, 276
DpnII GATC 4 cut(s) 21, 148, 158, 274
EaeI YGGCCR 1 cut(s) 37
Ecl136II GAGCTC 2 cut(s) 31, 46
Eco24I GRGCYC 2 cut(s) 33, 48
Eco47I GGWCC 1 cut(s) 270
Eco53kI GAGCTC 2 cut(s) 31, 46
Eco57I CTGAAG 1 cut(s) 183
EcoICRI GAGCTC 2 cut(s) 31, 46
EcoT38I GRGCYC 2 cut(s) 33, 48
FaeI CATG 2 cut(s) 227, 367
FaiI YATR 2 cut(s) 225, 365
FatI CATG 2 cut(s) 223, 363
FauI CCCGC 1 cut(s) 137
FblI GTMKAC 2 cut(s) 237, 294
Fnu4HI GCNGC 2 cut(s) 37, 136
FokI GGATG 2 cut(s) 154, 364
FriOI GRGCYC 2 cut(s) 33, 48
Fsp4HI GCNGC 2 cut(s) 37, 136
GluI GCNGC 2 cut(s) 37, 136
HaeIII GGCC 2 cut(s) 39, 281
HapII CCGG 1 cut(s) 205
Hin1II CATG 2 cut(s) 227, 367
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 5 cut(s) 62, 122, 130, 355, 360
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 238, 295, 334
Hpy188I TCNGA 5 cut(s) 121, 127, 163, 172, 274
Hpy188III TCNNGA 1 cut(s) 346
Hpy8I GTNNAC 3 cut(s) 238, 295, 334
HpyAV CCTTC 3 cut(s) 106, 239, 292
HpyCH4V TGCA 2 cut(s) 334, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 250
HpyF3I CTNAG 2 cut(s) 155, 245
Hsp92II CATG 2 cut(s) 227, 367
Kzo9I GATC 4 cut(s) 21, 148, 158, 274
LmnI GCTCC 2 cut(s) 72, 193
LpnPI CCDG 3 cut(s) 198, 218, 263
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 4 cut(s) 176, 223, 373, 387
MalI GATC 4 cut(s) 23, 150, 160, 276
MboI GATC 4 cut(s) 21, 148, 158, 274
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 3 cut(s) 33, 48, 336
MluCI AATT 4 cut(s) 51, 56, 286, 325
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 6 cut(s) 20, 82, 201, 276, 292, 342
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 141, 250
NdeII GATC 4 cut(s) 21, 148, 158, 274
NlaIII CATG 2 cut(s) 227, 367
NmeAIII GCCGAG 1 cut(s) 12
NspV TTCGAA 2 cut(s) 323, 358
PfeI GAWTC 4 cut(s) 122, 130, 355, 360
PkrI GCNGC 2 cut(s) 38, 137
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp124BI GAGCTC 2 cut(s) 33, 48
PspPI GGNCC 1 cut(s) 270
PsuI RGATCY 1 cut(s) 158
Rsr2I CGGWCCG 1 cut(s) 270
RsrII CGGWCCG 1 cut(s) 270
SacI GAGCTC 2 cut(s) 33, 48
SatI GCNGC 2 cut(s) 37, 136
Sau3AI GATC 4 cut(s) 21, 148, 158, 274
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 3 cut(s) 33, 48, 336
SetI ASST 8 cut(s) 12, 18, 33, 48, 117, 190, 268, 303
SfaNI GCATC 4 cut(s) 176, 223, 373, 387
SfcI CTRYAG 1 cut(s) 401
SfuI TTCGAA 2 cut(s) 323, 358
SinI GGWCC 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 4 cut(s) 51, 56, 286, 325
SsiI CCGC 2 cut(s) 36, 144
SspI AATATT 1 cut(s) 90
SstI GAGCTC 2 cut(s) 33, 48
TaqI TCGA 3 cut(s) 20, 323, 358
TaqII GACCGA 1 cut(s) 258
TasI AATT 4 cut(s) 51, 56, 286, 325
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 4 cut(s) 122, 130, 355, 360
TseI GCWGC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 68
VneI GTGCAC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 270
XapI RAATTY 1 cut(s) 56
XmiI GTMKAC 2 cut(s) 237, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.