Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Forward (+)

28179228 .. 28182438

Gene Structure 3211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG264100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGATCACCTCCTCCGATCGTATTCCCGTCACCGTCATCGACACATCATCCATCATGGAGACTAGTATTAAGCGCAACGAAGAACTAAAGCGAGTGGATGCAGTGTTGCTAACATACGCCTATGATCAGCCAATGACGCTTACTCGTATCTCTAGCTGCTGGCTCCCTGAGCTTCGTCGGTTGGAGGTTTTGCTTTATAAATTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04137 ko04214 map04137 map04214

Pfam Domains

Protein Families

EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

69

Amino Acids

8.08

Weight (kDa)

7.87

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	205
AhlI	ACTAGT	1 cut(s)	62
AluBI	AGCT	2 cut(s)	156, 172
AluI	AGCT	2 cut(s)	156, 172
Alw26I	GTCTC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	59
BclI	TGATCA	2 cut(s)	3, 124
BcoDI	GTCTC	1 cut(s)	53
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	2 cut(s)	63, 153
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	164
BmsI	GCATC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	168
BseGI	GGATG	2 cut(s)	47, 103
BseMII	CTCAG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	3, 16, 124
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	164
BssMI	GATC	3 cut(s)	3, 16, 124
Bst4CI	ACNGT	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	47, 103
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	3 cut(s)	6, 19, 127
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	3, 16, 124
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 169
BstV1I	GCAGC	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	47, 103
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	161
CfoI	GCGC	1 cut(s)	75
CseI	GACGC	1 cut(s)	145
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	4 cut(s)	130, 156, 163, 172
CviKI_1	RGCY	4 cut(s)	130, 156, 163, 172
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	3 cut(s)	5, 18, 126
DpnII	GATC	3 cut(s)	3, 16, 124
FaeI	CATG	1 cut(s)	58
FaiI	YATR	4 cut(s)	56, 115, 123, 198
FatI	CATG	1 cut(s)	54
FbaI	TGATCA	2 cut(s)	3, 124
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	2 cut(s)	34, 110
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	2 cut(s)	63, 153
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	157
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	180
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 169
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	2 cut(s)	3, 124
Kzo9I	GATC	3 cut(s)	3, 16, 124
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	2 cut(s)	145, 180
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	63, 153
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	5, 18, 126
MboI	GATC	3 cut(s)	3, 16, 124
MboII	GAAGA	1 cut(s)	92
MluCI	AATT	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	3 cut(s)	19, 22, 178
MseI	TTAA	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	136, 169
NdeII	GATC	3 cut(s)	3, 16, 124
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	158
Ple19I	CGATCG	1 cut(s)	19
PsiI	TTATAA	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	164
PvuI	CGATCG	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	3 cut(s)	3, 16, 124
SetI	ASST	4 cut(s)	11, 158, 174, 189
SfaNI	GCATC	1 cut(s)	88
SgeI	CNNG	8 cut(s)	38, 67, 75, 104, 156, 165, 172, 179
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	1 cut(s)	200
SspMI	CTAG	2 cut(s)	63, 153
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	28
TspRI	CASTG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	200
XspI	CTAG	2 cut(s)	63, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.