Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001308

Physical Location & Seq

Genomic Coordinates Reverse (-)

22612471 .. 22614825

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGACATCACCCTCCTCTACGACGCCGTTTCAGTAGCCAACACCACCGCCCAAGGTCTAGGCTTCTCAAATCTCCCACTTCGCAACCACCACCTCACCTCCACCAACCAAATATCCGTCGCCGCCGATTCCCATCCCGACGATTCCCCGCCGTCCCTCCAGATCTCCGCCTTCATCTTCCCCGTCGACACCGTCGCTCCGCCGCGCGTGCGCTCCAACTCCTACAGAACCGCCACCCGCACCCTCATCCGCAAGAAGCGGCGCACCAGGCGGCGATCCTCGAGCGGCGATGACCCCAACGACGGCGGCGAGGAGGACGGCGGGTTCTTCGGCGGCGACGGTCCGTTTTTCAACGGAGGATGGGGCGGCGGTGGAGGCGGCGGCGGCGGGGGTTGGAATTTCGATAGGTTCGGAGGGAATAGTTGGGATGACTCGTCGTCGTCGAGGTCCGATCCGGCGATCGATTTCTTCTACGAGGTGATGGGGTGGATTGCGCTCTCGAATTGCGTGCACTTTGCTTTCAAGAGGATGGTTCGAATCGTGGCGGATGGGTTAGGCGATGAGGAGAGAGAGAAGGTGCCTATGAGATTGGCTTCGGTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

21.7

Weight (kDa)

5.78

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06780
fragaria_vesca	FvH4_4g18790
malus_domestica	MD16G1162700.v1.1
prunus_persica	Prupe.1G130200_v2.0.a1
pyrus_communis	pycom13g13910 pycom16g13790
rosa_chinensis	RchiOBHm_Chr4g0423591 RchiOBHm_Chr6g0307301 RchiOBHm_Chr7g0221621
rosa_laevigata	RLG00000003967 RLG00000007543 RLG00000010059 RLG00000011702 RLG00000013492 RLG00000017192 RLG00000028004 RLG00000029608
rosa_multiflora	Rmu_sc0000464.1_g000020 Rmu_sc0004342.1_g000001 Rmu_sc0025855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101030 Rroxscaffold_4G00328740 Rroxscaffold_6G00397560 Rroxscaffold_6G00414570
rosa_rugosa	Rorug01G0266300 Rorug03G0300700 Rorug03G0371500 Rorug04G0188900
rosa_samantha	Rh2AG632900 Rh2BG646500 Rh3AG314000 Rh3BG341300 Rh3CG338900 Rh3DG340700 Rh4AG005500 Rh4AG248500 Rh4CG031500 Rh4CG261700 Rh4DG004500 Rh4DG244700 Rh5CG010400 Rh5CG264100 Rh5CG272600 Rh5DG250000 Rh5DG297400 Rh5DG571900 Rh6AG109400 Rh6AG110700 Rh6AG112200 Rh7AG379300 Rh7AG379400 Rh7CG399000 Rh7DG369500
rosa_wichuraiana	Rw4G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	577
AccBSI	CCGCTC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	2 cut(s)	205, 207
AclWI	GGATC	2 cut(s)	270, 446
AcsI	RAATTY	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	352, 523
AhdI	GACNNNNNGTC	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	266
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
Alw21I	GWGCWC	1 cut(s)	513
Alw44I	GTGCAC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	270, 446
Ama87I	CYCGRG	1 cut(s)	280
ApaLI	GTGCAC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	397
AspLEI	GCGC	4 cut(s)	207, 213, 264, 496
AspS9I	GGNCC	2 cut(s)	341, 447
AsuHPI	GGTGA	2 cut(s)	88, 490
AsuII	TTCGAA	1 cut(s)	535
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	2 cut(s)	341, 447
BaeGI	GKGCMC	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	513
BccI	CCATC	5 cut(s)	141, 354, 475, 523, 542
BceAI	ACGGC	4 cut(s)	11, 136, 319, 334
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	1 cut(s)	268
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	223
BglII	AGATCT	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	2 cut(s)	341, 447
BmeRI	GACNNNNNGTC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	341, 447
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	535
Bsa29I	ATCGAT	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	52
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 181, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	6 cut(s)	133, 246, 365, 433, 534, 553
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseRI	GAGGAG	3 cut(s)	5, 326, 578
BseSI	GKGCMC	1 cut(s)	513
Bsh1236I	CGCG	2 cut(s)	205, 207
Bsh1285I	CGRYCG	1 cut(s)	462
BshNI	GGYRCC	1 cut(s)	577
BshVI	ATCGAT	1 cut(s)	462
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	162, 275, 451, 459
BspDI	ATCGAT	1 cut(s)	462
BspFNI	CGCG	2 cut(s)	205, 207
BspLI	GGNNCC	1 cut(s)	579
BspPI	GGATC	2 cut(s)	270, 446
BspT104I	TTCGAA	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	577
BsrBI	CCGCTC	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	4 cut(s)	162, 275, 451, 459
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	193, 341
BstACI	GRCGYC	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	209, 509
BstF5I	GGATG	6 cut(s)	133, 246, 365, 433, 534, 553
BstFNI	CGCG	2 cut(s)	205, 207
BstHHI	GCGC	4 cut(s)	207, 213, 264, 496
BstKTI	GATC	4 cut(s)	165, 278, 454, 462
BstMBI	GATC	4 cut(s)	162, 275, 451, 459
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 268, 375, 384
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	513
BstUI	CGCG	2 cut(s)	205, 207
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	462
BsuTUI	ATCGAT	1 cut(s)	462
BtgZI	GCGATG	2 cut(s)	303, 573
BtsCI	GGATG	6 cut(s)	133, 246, 365, 433, 534, 553
Cac8I	GCNNGC	2 cut(s)	209, 509
CfoI	GCGC	4 cut(s)	207, 213, 264, 496
Cfr13I	GGNCC	2 cut(s)	341, 447
ClaI	ATCGAT	1 cut(s)	462
CpoI	CGGWCCG	1 cut(s)	341
CseI	GACGC	1 cut(s)	32
CspI	CGGWCCG	1 cut(s)	341
CviJI	RGCY	3 cut(s)	38, 63, 593
CviKI_1	RGCY	3 cut(s)	38, 63, 593
DpnI	GATC	4 cut(s)	164, 277, 453, 461
DpnII	GATC	4 cut(s)	162, 275, 451, 459
DriI	GACNNNNNGTC	1 cut(s)	436
Eam1105I	GACNNNNNGTC	1 cut(s)	436
EciI	GGCGGA	3 cut(s)	157, 189, 560
Eco130I	CCWWGG	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	341, 447
Eco88I	CYCGRG	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaiI	YATR	1 cut(s)	584
FaqI	GGGAC	1 cut(s)	139
FauI	CCCGC	4 cut(s)	156, 245, 314, 380
FblI	GTMKAC	1 cut(s)	186
FokI	GGATG	6 cut(s)	120, 233, 372, 440, 541, 560
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	4 cut(s)	206, 212, 263, 495
GsuI	CTGGAG	1 cut(s)	143
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	4 cut(s)	207, 213, 264, 496
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	4 cut(s)	205, 211, 262, 494
HinP1I	GCGC	4 cut(s)	205, 211, 262, 494
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	4 cut(s)	128, 143, 431, 537
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	2 cut(s)	88, 490
Hpy166II	GTNNAC	2 cut(s)	187, 511
Hpy188I	TCNGA	2 cut(s)	413, 451
Hpy188III	TCNNGA	4 cut(s)	137, 160, 499, 523
Hpy8I	GTNNAC	2 cut(s)	187, 511
HpyAV	CCTTC	2 cut(s)	181, 568
HpyCH4III	ACNGT	2 cut(s)	193, 341
HpyCH4V	TGCA	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 268, 375, 384
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	4 cut(s)	205, 211, 262, 494
Kzo9I	GATC	4 cut(s)	162, 275, 451, 459
LmnI	GCTCC	2 cut(s)	202, 218
LpnPI	CCDG	4 cut(s)	173, 253, 280, 468
MaeI	CTAG	1 cut(s)	59
MalI	GATC	4 cut(s)	164, 277, 453, 461
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	4 cut(s)	162, 275, 451, 459
MboII	GAAGA	3 cut(s)	169, 319, 460
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	2 cut(s)	397, 502
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	2 cut(s)	240, 374
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	2 cut(s)	205, 207
MwoI	GCNNNNNNNGC	4 cut(s)	208, 268, 375, 384
NdeII	GATC	4 cut(s)	162, 275, 451, 459
NlaIV	GGNNCC	1 cut(s)	579
NspV	TTCGAA	1 cut(s)	535
PaeR7I	CTCGAG	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 440
PfeI	GAWTC	3 cut(s)	128, 143, 537
PflFI	GACNNNGTC	1 cut(s)	191
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	2 cut(s)	341, 447
PspXI	VCTCGAGB	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	191
PvuI	CGATCG	1 cut(s)	462
Rsr2I	CGGWCCG	1 cut(s)	341
RsrII	CGGWCCG	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	185
Sau3AI	GATC	4 cut(s)	162, 275, 451, 459
Sau96I	GGNCC	2 cut(s)	341, 447
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	7 cut(s)	58, 96, 101, 410, 449, 480, 579
SfcI	CTRYAG	1 cut(s)	223
Sfr274I	CTCGAG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	535
SinI	GGWCC	2 cut(s)	341, 447
SlaI	CTCGAG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	2 cut(s)	397, 502
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	193, 341
TaqI	TCGA	7 cut(s)	186, 281, 402, 443, 462, 500, 535
TaqII	GACCGA	1 cut(s)	586
TasI	AATT	2 cut(s)	397, 502
TfiI	GAWTC	3 cut(s)	128, 143, 537
TspDTI	ATGAA	1 cut(s)	163
TspGWI	ACGGA	3 cut(s)	106, 333, 369
Tth111I	GACNNNGTC	1 cut(s)	191
VneI	GTGCAC	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	341, 447
XapI	RAATTY	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.