Prupe.1G130200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001308
Physical Location & Seq
Forward (+)
10126675 .. 10128047
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G130200.1

Sequence Viewer

Length: 609 bp
ATGGACGTCTCCCTCCTATACGACACCGTTACAGTCGCCACCACCGCACAGGGCCTAGGGTTCGCCAAGTTCCTAATTCGTCACCATGACCTCACCTCCAACAACCAAATCTCAATCACCGACTCTCATCCAGATCAATCATCGCCGTCCAATGGAGTCCCCCAGATCTCGGCCGTTATTTTTCCCGTCGACGCTGTCGCTCCGCCGCGTGTCAGGCCCAATTCTCACAAAACCGCCACCCGAACCCTCCTTCGCAAAAAGCGCCGCACCAGACGGAGATCGTCGAGCGGCGACGATTTGAACGACGGCGGAGAAGAGGACGGTGGGTTTTTCGGTGGAGATGGTCCGTTTTTCAACGGAGGATGGGGCGGAAGCGGAGGTGGTGGCGGGGGTTGGAATTTCGATAGATTTGGAGGGCATAATTGGGATGAGTCGTCGTCTTCTTCGCCGTCGGATCCTGCGTTTGATTTCGTGTACGAGGTGATGTGCTGGATTGCGCTTTCGAATTGCGTGCACTTCGCCTTCAAGAGGGTTATTCGTATCGTGGCGGATGGGTTGGGCGACGCGGAGAGAGCGAAGGTGCCGATGAGATTGACTTCGGTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.78

Weight (kDa)

6.58

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 580
AccBSI CCGCTC 1 cut(s) 288
AccI GTMKAC 1 cut(s) 189
AccII CGCG 2 cut(s) 208, 566
AclWI GGATC 2 cut(s) 449, 462
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 1 cut(s) 397
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 3 cut(s) 152, 169, 528
AgsI TTSAA 3 cut(s) 301, 355, 526
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 1 cut(s) 13
Alw44I GTGCAC 1 cut(s) 512
AlwI GGATC 2 cut(s) 449, 462
AoxI GGCC 3 cut(s) 52, 171, 215
ApaLI GTGCAC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 397
AspA2I CCTAGG 1 cut(s) 55
AspLEI GCGC 2 cut(s) 264, 499
AspS9I GGNCC 3 cut(s) 52, 216, 344
AsuHPI GGTGA 4 cut(s) 74, 85, 109, 493
AsuII TTCGAA 1 cut(s) 503
AvaII GGWCC 1 cut(s) 344
AvrII CCTAGG 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 516
BamHI GGATCC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 516
BccI CCATC 3 cut(s) 335, 357, 545
BceAI ACGGC 4 cut(s) 130, 158, 322, 433
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 265
BglII AGATCT 1 cut(s) 165
BisI GCNGC 3 cut(s) 206, 265, 289
BlnI CCTAGG 1 cut(s) 55
BlsI GCNGC 3 cut(s) 207, 266, 290
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 3 cut(s) 52, 216, 344
BmiI GGNNCC 2 cut(s) 456, 582
BoxI GACNNNNGTC 1 cut(s) 599
BpiI GAAGAC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 169, 528
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 4 cut(s) 127, 368, 433, 556
BseLI CCNNNNNNNGG 3 cut(s) 152, 169, 528
BseSI GKGCMC 1 cut(s) 516
BseX3I CGGCCG 1 cut(s) 171
Bsh1236I CGCG 2 cut(s) 208, 566
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 54, 173, 217
BshNI GGYRCC 1 cut(s) 580
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 516
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 3 cut(s) 152, 169, 528
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 3 cut(s) 54, 173, 217
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 4 cut(s) 133, 165, 278, 454
BspANI GGCC 3 cut(s) 54, 173, 217
BspFNI CGCG 2 cut(s) 208, 566
BspLI GGNNCC 2 cut(s) 456, 582
BspPI GGATC 2 cut(s) 449, 462
BspT104I TTCGAA 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 580
BsrBI CCGCTC 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 4 cut(s) 133, 165, 278, 454
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 55
Bst4CI ACNGT 3 cut(s) 28, 34, 323
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 6
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 512
BstENI CCTNNNNNAGG 1 cut(s) 526
BstF5I GGATG 4 cut(s) 127, 368, 433, 556
BstFNI CGCG 2 cut(s) 208, 566
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 264, 499
BstKTI GATC 4 cut(s) 136, 168, 281, 457
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 4 cut(s) 133, 165, 278, 454
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 4 cut(s) 44, 214, 261, 572
BstPAI GACNNNNGTC 1 cut(s) 599
BstSLI GKGCMC 1 cut(s) 516
BstUI CGCG 2 cut(s) 208, 566
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 2 cut(s) 165, 454
BstYI RGATCY 2 cut(s) 165, 454
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 3 cut(s) 54, 173, 217
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 4 cut(s) 127, 368, 433, 556
Cac8I GCNNGC 1 cut(s) 512
CfoI GCGC 2 cut(s) 264, 499
Cfr13I GGNCC 3 cut(s) 52, 216, 344
CseI GACGC 2 cut(s) 200, 572
Csp6I GTAC 1 cut(s) 475
CviAII CATG 1 cut(s) 86
CviJI RGCY 3 cut(s) 54, 173, 217
CviKI_1 RGCY 3 cut(s) 54, 173, 217
CviQI GTAC 1 cut(s) 475
DpnI GATC 4 cut(s) 135, 167, 280, 456
DpnII GATC 4 cut(s) 133, 165, 278, 454
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 4 cut(s) 192, 324, 384, 563
EclXI CGGCCG 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 344
Eco52I CGGCCG 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 1 cut(s) 89
FaiI YATR 3 cut(s) 19, 87, 420
FaqI GGGAC 1 cut(s) 143
FatI CATG 1 cut(s) 85
FauI CCCGC 1 cut(s) 380
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 206, 265, 289
FokI GGATG 4 cut(s) 114, 375, 440, 563
Fsp4HI GCNGC 3 cut(s) 206, 265, 289
FspBI CTAG 1 cut(s) 56
GlaI GCGC 2 cut(s) 263, 498
GluI GCNGC 3 cut(s) 206, 265, 289
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 3 cut(s) 54, 173, 217
HgaI GACGC 2 cut(s) 200, 572
HhaI GCGC 2 cut(s) 264, 499
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 2 cut(s) 262, 497
HinP1I GCGC 2 cut(s) 262, 497
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 3 cut(s) 122, 156, 431
HphI GGTGA 4 cut(s) 74, 85, 109, 493
Hpy166II GTNNAC 3 cut(s) 190, 475, 514
Hpy188I TCNGA 1 cut(s) 454
Hpy188III TCNNGA 2 cut(s) 131, 526
Hpy8I GTNNAC 3 cut(s) 190, 475, 514
Hpy99I CGWCG 8 cut(s) 191, 194, 286, 296, 308, 439, 454, 566
HpyAV CCTTC 3 cut(s) 260, 532, 571
HpyCH4III ACNGT 3 cut(s) 28, 34, 323
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 514
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 214, 261, 572
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 2 cut(s) 262, 497
Kzo9I GATC 4 cut(s) 133, 165, 278, 454
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 7 cut(s) 35, 144, 176, 199, 283, 471, 475
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 28, 80
MalI GATC 4 cut(s) 135, 167, 280, 456
MbiI CCGCTC 1 cut(s) 288
MboI GATC 4 cut(s) 133, 165, 278, 454
MboII GAAGA 3 cut(s) 326, 432, 435
MflI RGATCY 2 cut(s) 165, 454
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 5 cut(s) 75, 220, 397, 421, 505
MlyI GAGTC 3 cut(s) 116, 165, 440
MmeI TCCRAC 3 cut(s) 123, 374, 432
MvnI CGCG 2 cut(s) 208, 566
MwoI GCNNNNNNNGC 4 cut(s) 44, 214, 261, 572
NdeII GATC 4 cut(s) 133, 165, 278, 454
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 2 cut(s) 456, 582
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 80
NspV TTCGAA 1 cut(s) 503
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 458
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 207, 266, 290
PleI GAGTC 3 cut(s) 116, 164, 439
PpsI GAGTC 3 cut(s) 116, 164, 439
PshAI GACNNNNGTC 1 cut(s) 599
PspN4I GGNNCC 2 cut(s) 456, 582
PspPI GGNCC 3 cut(s) 52, 216, 344
PsuI RGATCY 2 cut(s) 165, 454
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SalI GTCGAC 1 cut(s) 188
SatI GCNGC 3 cut(s) 206, 265, 289
Sau3AI GATC 4 cut(s) 133, 165, 278, 454
Sau96I GGNCC 3 cut(s) 52, 216, 344
SchI GAGTC 3 cut(s) 116, 165, 440
SduI GDGCHC 1 cut(s) 516
SetI ASST 6 cut(s) 9, 93, 98, 382, 483, 582
SfuI TTCGAA 1 cut(s) 503
SgrDI CGTCGACG 1 cut(s) 188
SinI GGWCC 1 cut(s) 344
Sse9I AATT 5 cut(s) 75, 220, 397, 421, 505
SspMI CTAG 1 cut(s) 56
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 28, 34, 323
TaiI ACGT 1 cut(s) 9
TaqI TCGA 4 cut(s) 189, 284, 402, 503
TaqII GACCGA 1 cut(s) 589
TasI AATT 5 cut(s) 75, 220, 397, 421, 505
TauI GCSGC 3 cut(s) 208, 267, 291
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspGWI ACGGA 3 cut(s) 289, 336, 372
Tth111I GACNNNGTC 1 cut(s) 194
VneI GTGCAC 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 344
XagI CCTNNNNNAGG 1 cut(s) 526
XapI RAATTY 1 cut(s) 397
XmaJI CCTAGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 56
ZraI GACGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.