RchiOBHm_Chr4g0423591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001308
Physical Location & Seq
Reverse (-)
49260980 .. 49262581
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39295

Sequence Viewer

Length: 603 bp
ATGGACATCTCCCTCCTCTACGACGCCGTTTCAGTAGCCAGCACCCCCGCGCAGGGTCTAGGGTTCTCAAATTTCCCGATTCGCAACCATCACCTCACCTCCACCAACCAAATCTCCGTCGCCGATTCCCACCCCGACGAATCCCCACCGTCCAACTCCCTCCAGATCTCCGCCTTCATCTTCCCCATCGACGCCGTCGCTCCGCCGCGCGTGCGTTCCAACTCCTACAAAACCGCCACCCGCACCCTCCTCCGCAAGAAGCGGCGCACCAGGCGGAGATCGTCGAGCGGCGACGACTCCAACGACGGCGGCGGCGAGGAGGACGGCGGGTTCTTCGGCGGCGACGGCCCGTTTTTCAACGGCGGATGGGGCGGCGGCGGCGGCGGGGGTTGGAATTTCGATAGATTCGGAGGGCATAATTGGGATGATTCGTCGTCGTCGCGGTCCGATCCGGCGTTCGATTTCGTCTACGAGGTGATGGGTTGGATTGCGCTTTCGAATTGCGTGCACTTTGCTTTCAAGAGGGTGATTCGAATCGTGGCGGATGGGTTAGGCGATGCGGAGAGAGAGAAGGTGCCTATGAGATTGGCTTCGGTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.62

Weight (kDa)

6.19

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 574
AccBSI CCGCTC 1 cut(s) 288
AccI GTMKAC 1 cut(s) 468
AccII CGCG 4 cut(s) 50, 208, 210, 442
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 2 cut(s) 70, 394
AcyI GRCGYC 2 cut(s) 24, 192
AfiI CCNNNNNNNGG 2 cut(s) 52, 53
AgsI TTSAA 2 cut(s) 358, 520
AjnI CCWGG 1 cut(s) 269
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
Alw21I GWGCWC 1 cut(s) 510
Alw44I GTGCAC 1 cut(s) 506
AlwI GGATC 1 cut(s) 443
AoxI GGCC 1 cut(s) 346
ApaLI GTGCAC 1 cut(s) 506
ApoI RAATTY 2 cut(s) 70, 394
AspLEI GCGC 4 cut(s) 52, 210, 267, 493
AspS9I GGNCC 2 cut(s) 347, 444
AsuHPI GGTGA 4 cut(s) 83, 88, 487, 538
AsuII TTCGAA 2 cut(s) 497, 532
AvaII GGWCC 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 510
BanI GGYRCC 1 cut(s) 574
Bbv12I GWGCWC 1 cut(s) 510
BccI CCATC 5 cut(s) 96, 194, 360, 472, 539
BceAI ACGGC 6 cut(s) 11, 179, 322, 340, 361, 376
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BciT130I CCWGG 1 cut(s) 271
BfaI CTAG 1 cut(s) 59
BglII AGATCT 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 2 cut(s) 347, 444
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 547
BpmI CTGGAG 1 cut(s) 146
Bpu14I TTCGAA 2 cut(s) 497, 532
BsaBI GATNNNNATC 1 cut(s) 533
BsaHI GRCGYC 2 cut(s) 24, 192
BsaXI ACNNNNNCTCC 4 cut(s) 83, 98, 113, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 53
Bse8I GATNNNNATC 1 cut(s) 533
BseBI CCWGG 1 cut(s) 271
BseGI GGATG 3 cut(s) 371, 430, 550
BseJI GATNNNNATC 1 cut(s) 533
BseLI CCNNNNNNNGG 2 cut(s) 52, 53
BseRI GAGGAG 3 cut(s) 5, 239, 332
BseSI GKGCMC 1 cut(s) 510
Bsh1236I CGCG 4 cut(s) 50, 208, 210, 442
BshFI GGCC 1 cut(s) 348
BshNI GGYRCC 1 cut(s) 574
BsiHKAI GWGCWC 1 cut(s) 510
BsiSI CCGG 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 52, 53
BsnI GGCC 1 cut(s) 348
Bsp119I TTCGAA 2 cut(s) 497, 532
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 3 cut(s) 165, 278, 448
BspANI GGCC 1 cut(s) 348
BspFNI CGCG 4 cut(s) 50, 208, 210, 442
BspLI GGNNCC 1 cut(s) 576
BspPI GGATC 1 cut(s) 443
BspT104I TTCGAA 2 cut(s) 497, 532
BspT107I GGYRCC 1 cut(s) 574
BsrBI CCGCTC 1 cut(s) 288
BssMI GATC 3 cut(s) 165, 278, 448
BssNI GRCGYC 2 cut(s) 24, 192
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 150
BstACI GRCGYC 2 cut(s) 24, 192
BstBI TTCGAA 2 cut(s) 497, 532
BstC8I GCNNGC 3 cut(s) 40, 212, 506
BstF5I GGATG 3 cut(s) 371, 430, 550
BstFNI CGCG 4 cut(s) 50, 208, 210, 442
BstHHI GCGC 4 cut(s) 52, 210, 267, 493
BstKTI GATC 3 cut(s) 168, 281, 451
BstMBI GATC 3 cut(s) 165, 278, 448
BstMWI GCNNNNNNNGC 6 cut(s) 211, 271, 345, 369, 378, 381
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 4 cut(s) 50, 208, 210, 442
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 1 cut(s) 348
BtgZI GCGATG 1 cut(s) 570
BtsCI GGATG 3 cut(s) 371, 430, 550
Cac8I GCNNGC 3 cut(s) 40, 212, 506
CfoI GCGC 4 cut(s) 52, 210, 267, 493
Cfr13I GGNCC 2 cut(s) 347, 444
CpoI CGGWCCG 1 cut(s) 444
CseI GACGC 2 cut(s) 32, 200
CspI CGGWCCG 1 cut(s) 444
CviJI RGCY 3 cut(s) 38, 348, 590
CviKI_1 RGCY 3 cut(s) 38, 348, 590
DpnI GATC 3 cut(s) 167, 280, 450
DpnII GATC 3 cut(s) 165, 278, 448
EciI GGCGGA 5 cut(s) 160, 192, 289, 378, 557
Eco47I GGWCC 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 269
FaiI YATR 2 cut(s) 417, 581
FauI CCCGC 4 cut(s) 55, 248, 320, 377
FblI GTMKAC 1 cut(s) 468
FokI GGATG 3 cut(s) 378, 437, 557
FspBI CTAG 1 cut(s) 59
GlaI GCGC 4 cut(s) 51, 209, 266, 492
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 1 cut(s) 348
HapII CCGG 1 cut(s) 452
HgaI GACGC 2 cut(s) 32, 200
HhaI GCGC 4 cut(s) 52, 210, 267, 493
Hin1I GRCGYC 2 cut(s) 24, 192
Hin6I GCGC 4 cut(s) 50, 208, 265, 491
HinP1I GCGC 4 cut(s) 50, 208, 265, 491
HinfI GANTC 8 cut(s) 79, 125, 140, 296, 405, 428, 529, 534
HpaII CCGG 1 cut(s) 452
HphI GGTGA 4 cut(s) 83, 88, 487, 538
Hpy166II GTNNAC 2 cut(s) 469, 508
Hpy188I TCNGA 2 cut(s) 410, 448
Hpy188III TCNNGA 3 cut(s) 76, 163, 520
Hpy8I GTNNAC 2 cut(s) 469, 508
HpyAV CCTTC 2 cut(s) 184, 565
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 508
HpyF10VI GCNNNNNNNGC 6 cut(s) 211, 271, 345, 369, 378, 381
Hsp92I GRCGYC 2 cut(s) 24, 192
HspAI GCGC 4 cut(s) 50, 208, 265, 491
Kzo9I GATC 3 cut(s) 165, 278, 448
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 6 cut(s) 38, 52, 176, 256, 283, 465
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 59
MalI GATC 3 cut(s) 167, 280, 450
MbiI CCGCTC 1 cut(s) 288
MboI GATC 3 cut(s) 165, 278, 448
MboII GAAGA 2 cut(s) 172, 325
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 4 cut(s) 70, 394, 418, 499
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 5 cut(s) 177, 243, 324, 371, 464
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 4 cut(s) 50, 208, 210, 442
MwoI GCNNNNNNNGC 6 cut(s) 211, 271, 345, 369, 378, 381
NdeII GATC 3 cut(s) 165, 278, 448
NlaIV GGNNCC 1 cut(s) 576
NspV TTCGAA 2 cut(s) 497, 532
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 312
PfeI GAWTC 7 cut(s) 79, 125, 140, 405, 428, 529, 534
PflFI GACNNNGTC 1 cut(s) 194
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 2 cut(s) 347, 444
PsuI RGATCY 1 cut(s) 165
PsyI GACNNNGTC 1 cut(s) 194
Rsr2I CGGWCCG 1 cut(s) 444
RsrII CGGWCCG 1 cut(s) 444
Sau3AI GATC 3 cut(s) 165, 278, 448
Sau96I GGNCC 2 cut(s) 347, 444
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 510
SetI ASST 4 cut(s) 96, 101, 477, 576
SfaNI GCATC 1 cut(s) 547
SfuI TTCGAA 2 cut(s) 497, 532
SinI GGWCC 1 cut(s) 444
Sse9I AATT 4 cut(s) 70, 394, 418, 499
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 150
TaqI TCGA 6 cut(s) 189, 284, 399, 459, 497, 532
TaqII GACCGA 1 cut(s) 583
TasI AATT 4 cut(s) 70, 394, 418, 499
TfiI GAWTC 7 cut(s) 79, 125, 140, 405, 428, 529, 534
TspDTI ATGAA 1 cut(s) 166
TspGWI ACGGA 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 194
VneI GTGCAC 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 2 cut(s) 70, 394
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.