Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000671

Physical Location & Seq

Genomic Coordinates Reverse (-)

9749493 .. 9753855

Gene Structure 4363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3507 bp

ATGGAAAAAGAAGAGCTCAACAAATTGAATCATCTCTCTCTCGTCTCCAATGTCTGCAACGAATTGGAAACGCATCTAGGATCTGCAGAAAAAGTTTTGGCTGAGTTCATTATCGATCTAGGTCGTCACTCTGAGACAGTCGATGAATTCGATAAGAATCTTAAGGAAGCAGGTGCAGAGATGCCGGATTACTTCGTCCGGTCGTTGTTAACTACAATCCACGGTATTTATCCTCCGAAGCCTAAGTCGGAGAAGAAGAAAGAGGAAGGTGATGATCAGAAATTCAAAGGCTTAGCGATTAAGGATACTAAGGATAAAGTTAAGGAGCTCGAGAAAGAGATTGAGAGAGAAGCTGAGGAGCGACGGAGAGAAGAGGATCGAAATAGAGATAGAGATCGGAGAGAATCCGGTAGGGATAGAGACAGAGATAGAAATCGTGATCGTGATGATAGAAGGGATCGACATAGGGATAGAGAGAGGAATCGTGGAGATGAAGAAGGTGAAGATAGAAGAAGTGATAGGAGGCATAGAGAAAGAGGACGTGGTGATGGTGGTGAAGGGGAAGATAGGCGTAGAGATAGGCGTGCGAAGGATGAGTATGTGGAGGAAGATAAAGGCGGTGCGAATGAGCCGGAGTTGTATCAGGTATATAAAGGGAGAGTTACTAGGGTTATGGATGCAGGTTGTTTTGTTCAGTTTGATAAGTTTAGAGGAAAAGAAGGTTTAGTTCATGTTTCTCAGATGGCTACTAGAAGGGTTGATAAGGCTAAGGAGTTTGTGAAGAGAGATATGGAGGTTTATGTGAAAGTTATATCGATTTCGAGTGATAAGTATAGTCTTTCTATGAGGGATGTTGATCAGAATACAGGTAGAGATTTGATTCCTTTGAGGAAGCCTTCAGATGAAGATGATTCATCCAGGAGTAATCCGTCGTATAGAACTAAGGATGGGCAAGTGACTAAGACTGGGATTTCAGGGATCAGGATTGTGGAGGAGAATGATGTTGCGCCTTCACGTAGACCGTTGAAGAAGATGAGCTCTCCTGAGAGATGGGAAGCCAAGCAGTTGATTGCCTCTGGTGTTTTGAGAGTAGATGAGTTTCCAATGTATGATGAGGATGGAGATGGGATGCTTTATCAAGAGGAAGGTGCTGAAGAAGAACTTGAGATTGAGATGAATGAAGACGAACCTGCTTTCTTACAAGGGCAGACTAGGTACTCTGTTGACATGTCTCCGGTTAAGATCTTCAAAAATCCAGAAGGTTCTTTGAGTCGTGCAGCTGCACTTCAGTCCGCTCTCACTAAGGAGAGGAGAGAAATGAGGGAACAACAGCAGAGAACAATGCTTGACTCAATCCCCAAGGATCTGAATCGGCCATGGGAAGACCCTATGCCTGAAACTGGTGAAAGGCATCTTGCTCAAGAGCTTAGGGGTGTTGGGTTATCAGCTTATGACATGCCTGAGTGGAAGAAGGATGCCTTTGGTAAAACTCCCACTTTTGGACAGAGATCAAAGCTTTCTATTCAAGAGCAAAGGGAGAGCCTTCCGATATACAAGTTGAAAAAGGAGCTGATACAGGCTGTGCACGATAATCAAGTTTTGGTGGTTATTGGTGAGACTGGATCTGGAAAGACAACACAGGTGACTCAGTACCTTGCAGAAGCAGGTTATACAACAAAAGGAAAGATTGGGTGTACCCAGCCTCGTAGGGTTGCTGCAATGTCTGTTGCCAAGAGAGTAGCTGAGGAGTTTGGTTGTCGTTTAGGAGAGGAGGTAGGGTATGCGATTCGGTTTGAAGATTGTACTGGACCGGATACAGTGATCAAGTACATGACTGATGGTATGCTTCTCAGGGAAATTCTGATAGATGAAAACCTCTCTCAGTACTCTGTAATCATGCTTGATGAAGCTCACGAGCGGACAATCCACACTGATGTGCTGTTTGGTCTTCTAAAGAAGCTGATGAAACGTAGACTCGACCTTCGTCTGATAGTCACGTCTGCCACATTGGATGCAGAGAAGTTCTCTGGGTACTTCTTTAACTGCAACATTTTTACCATTCCTGGAAGAACATTTCCTGTTGAGATACTATATACCAAACAGCCAGAAACAGATTACTTGGATGCCGCTCTGATCACAGTCCTTCAGATTCACTTGACTGAACCTGAGGGTGATATTCTGGTCTTTTTGACGGGACAGGAAGAAATCGATTCTGCCTGCCAGTCTCTGTACGAGAGGATGAAAGGTCTAGGTAAAAATGTTCCCGAACTCATCATACTTCCAGTTTACAGTGCGCTTCCTAGTGAAATGCAGTCTAGAATTTTTGATCCTCCCCCTCCTGGTAAACGGAAAGTGGTTGTAGCTACAAATATTGCAGAAGCTTCTTTAACAATAGATGGGATATACTATGTTGTTGATCCTGGGTTTGCTAAGCAGAACGTGTACAATCCAAAGCAAGGGCTGGAATCGCTAGTCATTACTCCAATTTCACAGGCATCAGCGAAGCAAAGGGCTGGACGTGCTGGTCGTACTGGGCCAGGGAAATGTTATCGTCTCTACACAGAGAGCGCATATCGTAATGAAATGCCTCCTACATCAATCCCTGAAATCCAAAGAATCAACCTTGGAATGACAACCTTGACCATGAAAGCAATGGGCATCAATGACCTGTTATCGTTTGACTTCATGGATCCACCCCAACCTCAAGCATTGATTTCTGCAATGGAACAGTTGTACAGCCTGGGAGCTTTGGATGAGGAAGGATTGTTGACAAAGCTAGGTAGAAAAATGGCTGAGTTTCCTCTTGAACCGCCGCTCTCTAAAATGTTGCTAGCTAGTGTGGATCTCGGGTGCAGCGATGAGATTTTAACGATGATTGCTATGATCCAGACGGGTAACATATTTTATAGACCAAGGGAGAAGCAAGCACAGGCAGACCAAAAACGGGCAAAGTTTTTCCAGCCCGAAGGTGATCACTTGACATTGCTAGCTGTGTATGAAGCTTGGAAGGCTAAAAACTTCTCAGGTCCATGGTGTTTCGAAAACTTCATACAGTCAAGATCGTTACGACGTGCTCAAGATGTGAGGAAACAACTTCTCAGCATTATGGACAAGTATAAACTAGACGTCGTAACTGCTGGAAAGAATTTCACGAAGATAAGGAAAGCAATCACGGCAGGATTCTTCTTCCATGGAGCAAGAAAAGATCCACAGGAAGGTTACAGGACGCTGGTGGAGAATCAACCGGTGTATATACACCCGAGCAGCGCGCTGTTCCAGAGACAACCAGACTGGGTTATATATCATGATCTTGTGATGACTACGAAAGAGTACATGAGGGAAGTGACTGTGATTGACCCAAAGTGGCTTGTTGAGTTAGCTCCAAGGTTCTTCAAAGTGTCTGACCCAACAAAAATGAGCAAGCGTAAGCGCCAAGAACGGATTGAGCCGTTGTATGACCGTTACCACGAGCCTAACTCATGGCGTCTCAGCAAAAGGCGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

1168

Amino Acids

134.16

Weight (kDa)

6.4

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1	PF00575	212 - 281	1.4e-11	S1 RNA binding domain
DEAD	PF00270	521 - 671	9.6e-08	DEAD/DEAH box helicase
AAA_22	PF13401	530 - 662	1.6e-06	AAA domain
Helicase_C	PF00271	715 - 845	4.3e-11	Helicase conserved C-terminal domain
WHD_HA2	PF04408	907 - 935	8.1e-11	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	936 - 995	3.7e-14	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	1053 - 1129	2.8e-25	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26560
fragaria_vesca	FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica	MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica	Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis	pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis	RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata	RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora	Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa	Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha	Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana	Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	161
AasI	GACNNNNNNGTC	1 cut(s)	2523
AatII	GACGTC	1 cut(s)	3129
Acc36I	ACCTGC	4 cut(s)	161, 671, 1198, 1655
AccBSI	CCGCTC	4 cut(s)	1295, 1918, 2129, 2815
AccI	GTMKAC	2 cut(s)	1018, 1972
AccII	CGCG	1 cut(s)	3269
AciI	CCGC	6 cut(s)	618, 1293, 1918, 2127, 2810, 2813
AcoI	YGGCCR	1 cut(s)	1373
AcsI	RAATTY	5 cut(s)	146, 281, 1857, 2319, 3145
AcuI	CTGAAG	4 cut(s)	882, 1173, 1271, 2129
AcyI	GRCGYC	2 cut(s)	3126, 3484
AfiI	CCNNNNNNNGG	6 cut(s)	1400, 1499, 2339, 2456, 2944, 3215
AflII	CTTAAG	1 cut(s)	161
AflIII	ACRYGT	2 cut(s)	1227, 2439
AgeI	ACCGGT	1 cut(s)	3244
AgsI	TTSAA	9 cut(s)	28, 286, 1027, 1249, 1526, 1561, 1796, 2807, 3394
AjiI	CACGTC	4 cut(s)	542, 1998, 2519, 3071
AjnI	CCWGG	6 cut(s)	917, 2062, 2338, 2419, 2536, 2739
AleI	CACNNNNGTG	1 cut(s)	1934
Alw21I	GWGCWC	5 cut(s)	18, 330, 1040, 1587, 3076
Alw26I	GTCTC	9 cut(s)	49, 128, 414, 1236, 1610, 2229, 2558, 3274, 3491
Alw44I	GTGCAC	1 cut(s)	1583
AlwNI	CAGNNNCTG	1 cut(s)	2227
Ama87I	CYCGRG	3 cut(s)	329, 2846, 3259
AoxI	GGCC	2 cut(s)	1373, 2534
ApaLI	GTGCAC	1 cut(s)	1583
ApeKI	GCWGC	5 cut(s)	1277, 1280, 1715, 2853, 3264
ApoI	RAATTY	5 cut(s)	146, 281, 1857, 2319, 3145
ArsI	GACNNNNNNTTYG	4 cut(s)	230, 262, 1965, 1997
AsiGI	ACCGGT	1 cut(s)	3244
AspLEI	GCGC	6 cut(s)	1009, 2296, 2570, 3269, 3271, 3432
AspS9I	GGNCC	3 cut(s)	1808, 2534, 3026
AsuHPI	GGTGA	9 cut(s)	281, 512, 557, 566, 1415, 1625, 1654, 2183, 2981
AsuII	TTCGAA	1 cut(s)	3039
AsuNHI	GCTAGC	2 cut(s)	2830, 2986
AvaI	CYCGRG	3 cut(s)	329, 2846, 3259
AvaII	GGWCC	2 cut(s)	1808, 3026
AxyI	CCTNAGG	1 cut(s)	2166
BaeGI	GKGCMC	1 cut(s)	1587
BamHI	GGATCC	1 cut(s)	2689
BanII	GRGCYC	3 cut(s)	18, 330, 1040
BauI	CACGAG	2 cut(s)	1913, 3467
BbsI	GAAGAC	3 cut(s)	1188, 1389, 1940
Bbv12I	GWGCWC	5 cut(s)	18, 330, 1040, 1587, 3076
BbvCI	CCTCAGC	2 cut(s)	354, 1743
BbvI	GCAGC	5 cut(s)	1267, 1289, 1702, 2865, 3276
BccI	CCATC	8 cut(s)	542, 736, 941, 1044, 1112, 1118, 1832, 2390
BceAI	ACGGC	2 cut(s)	3189, 3433
BciT130I	CCWGG	6 cut(s)	919, 2064, 2340, 2421, 2538, 2741
BciVI	GTATCC	2 cut(s)	298, 1807
BclI	TGATCA	5 cut(s)	274, 856, 1821, 2133, 2971
BcoDI	GTCTC	9 cut(s)	49, 128, 414, 1236, 1610, 2229, 2558, 3274, 3491
BfmI	CTRYAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	3433
BfrI	CTTAAG	1 cut(s)	161
BfuAI	ACCTGC	4 cut(s)	161, 671, 1198, 1655
BfuI	GTATCC	2 cut(s)	298, 1807
BglII	AGATCT	1 cut(s)	1242
BisI	GCNGC	7 cut(s)	1278, 1281, 1716, 2127, 2813, 2854, 3265
BlpI	GCTNAGC	2 cut(s)	292, 2430
BlsI	GCNGC	7 cut(s)	1279, 1282, 1717, 2128, 2814, 2855, 3266
BmcAI	AGTACT	1 cut(s)	1886
Bme1390I	CCNGG	6 cut(s)	919, 2064, 2340, 2421, 2538, 2741
Bme18I	GGWCC	2 cut(s)	1808, 3026
BmeT110I	CYCGRG	3 cut(s)	329, 2846, 3259
BmgBI	CACGTC	4 cut(s)	542, 1998, 2519, 3071
BmgT120I	GGNCC	3 cut(s)	1808, 2534, 3026
BmiI	GGNNCC	1 cut(s)	2691
BmrFI	CCNGG	6 cut(s)	919, 2064, 2340, 2421, 2538, 2741
BmrI	ACTGGG	3 cut(s)	975, 2541, 3301
BmtI	GCTAGC	2 cut(s)	2834, 2990
BmuI	ACTGGG	3 cut(s)	975, 2541, 3301
BoxI	GACNNNNGTC	1 cut(s)	1983
BpiI	GAAGAC	3 cut(s)	1188, 1389, 1940
BplI	GAGNNNNNCTC	4 cut(s)	2009, 2041, 3461, 3493
Bpu10I	CCTNAGC	4 cut(s)	354, 768, 1427, 1743
Bpu1102I	GCTNAGC	2 cut(s)	292, 2430
Bpu14I	TTCGAA	1 cut(s)	3039
BpuEI	CTTGAG	4 cut(s)	1184, 1404, 2688, 3060
Bsa29I	ATCGAT	3 cut(s)	114, 815, 2208
BsaAI	YACGTR	1 cut(s)	1016
BsaBI	GATNNNNATC	5 cut(s)	156, 393, 432, 855, 1368
BsaHI	GRCGYC	2 cut(s)	3126, 3484
BsaWI	WCCGGW	5 cut(s)	198, 407, 1234, 1810, 3244
BsaXI	ACNNNNNCTCC	4 cut(s)	1758, 1763, 1788, 1793
Bsc4I	CCNNNNNNNGG	6 cut(s)	1400, 1499, 2339, 2456, 2944, 3215
Bse118I	RCCGGY	1 cut(s)	3244
Bse1I	ACTGG	8 cut(s)	970, 1405, 1624, 1810, 2221, 2282, 2536, 3296
Bse21I	CCTNAGG	1 cut(s)	2166
Bse3DI	GCAATG	4 cut(s)	1725, 2658, 2727, 2981
Bse8I	GATNNNNATC	5 cut(s)	156, 393, 432, 855, 1368
BseBI	CCWGG	6 cut(s)	919, 2064, 2340, 2421, 2538, 2741
BseCI	ATCGAT	3 cut(s)	114, 815, 2208
BseJI	GATNNNNATC	5 cut(s)	156, 393, 432, 855, 1368
BseLI	CCNNNNNNNGG	6 cut(s)	1400, 1499, 2339, 2456, 2944, 3215
BseMI	GCAATG	4 cut(s)	1725, 2658, 2727, 2981
BseNI	ACTGG	8 cut(s)	970, 1405, 1624, 1810, 2221, 2282, 2536, 3296
BsePI	GCGCGC	1 cut(s)	3267
BseRI	GAGGAG	5 cut(s)	371, 1007, 1324, 1760, 1784
BseSI	GKGCMC	1 cut(s)	1587
BseXI	GCAGC	5 cut(s)	1267, 1289, 1702, 2865, 3276
BseYI	CCCAGC	1 cut(s)	1698
BsgI	GTGCAG	4 cut(s)	195, 1266, 1296, 2872
Bsh1236I	CGCG	1 cut(s)	3269
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	2 cut(s)	1375, 2536
BshTI	ACCGGT	1 cut(s)	3244
BshVI	ATCGAT	3 cut(s)	114, 815, 2208
BsiEI	CGRYCG	1 cut(s)	203
BsiHKAI	GWGCWC	5 cut(s)	18, 330, 1040, 1587, 3076
BsiHKCI	CYCGRG	3 cut(s)	329, 2846, 3259
BsiSI	CCGG	7 cut(s)	185, 199, 408, 632, 1235, 1811, 3245
BslFI	GGGAC	1 cut(s)	2208
BslI	CCNNNNNNNGG	6 cut(s)	1400, 1499, 2339, 2456, 2944, 3215
BsmAI	GTCTC	9 cut(s)	49, 128, 414, 1236, 1610, 2229, 2558, 3274, 3491
BsmBI	CGTCTC	3 cut(s)	49, 2558, 3491
BsmFI	GGGAC	1 cut(s)	2208
BsnI	GGCC	2 cut(s)	1375, 2536
BsoBI	CYCGRG	3 cut(s)	329, 2846, 3259
Bsp119I	TTCGAA	1 cut(s)	3039
Bsp1286I	GDGCHC	5 cut(s)	18, 330, 1040, 1587, 3076
Bsp1407I	TGTACA	2 cut(s)	2442, 2733
Bsp1720I	GCTNAGC	2 cut(s)	292, 2430
Bsp19I	CCATGG	3 cut(s)	1376, 3029, 3190
BspACI	CCGC	6 cut(s)	618, 1293, 1918, 2127, 2810, 2813
BspANI	GGCC	2 cut(s)	1375, 2536
BspDI	ATCGAT	3 cut(s)	114, 815, 2208
BspFNI	CGCG	1 cut(s)	3269
BspHI	TCATGA	1 cut(s)	3304
BspLI	GGNNCC	1 cut(s)	2691
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	4 cut(s)	161, 671, 1198, 1655
BspOI	GCTAGC	2 cut(s)	2834, 2990
BspQI	GCTCTTC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	3039
BspTI	CTTAAG	1 cut(s)	161
BsrBI	CCGCTC	4 cut(s)	1295, 1918, 2129, 2815
BsrDI	GCAATG	4 cut(s)	1725, 2658, 2727, 2981
BsrFI	RCCGGY	1 cut(s)	3244
BsrGI	TGTACA	2 cut(s)	2442, 2733
BsrI	ACTGG	8 cut(s)	970, 1405, 1624, 1810, 2221, 2282, 2536, 3296
BssAI	RCCGGY	1 cut(s)	3244
BssHII	GCGCGC	1 cut(s)	3267
BssNI	GRCGYC	2 cut(s)	3126, 3484
BssSI	CACGAG	2 cut(s)	1913, 3467
BssT1I	CCWWGG	7 cut(s)	1359, 1376, 2623, 2912, 3029, 3190, 3383
Bst2BI	CACGAG	2 cut(s)	1913, 3467
Bst2UI	CCWGG	6 cut(s)	919, 2064, 2340, 2421, 2538, 2741
Bst6I	CTCTTC	3 cut(s)	6, 366, 776
BstACI	GRCGYC	2 cut(s)	3126, 3484
BstAFI	CTTAAG	1 cut(s)	161
BstAUI	TGTACA	2 cut(s)	2442, 2733
BstBAI	YACGTR	1 cut(s)	1016
BstBI	TTCGAA	1 cut(s)	3039
BstC8I	GCNNGC	8 cut(s)	585, 2218, 2832, 2925, 2988, 3269, 3422, 3501
BstDSI	CCRYGG	4 cut(s)	220, 1376, 3029, 3190
BstFNI	CGCG	1 cut(s)	3269
BstH2I	RGCGCY	1 cut(s)	3433
BstHHI	GCGC	6 cut(s)	1009, 2296, 2570, 3269, 3271, 3432
BstMAI	GTCTC	9 cut(s)	49, 128, 414, 1236, 1610, 2229, 2558, 3274, 3491
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	4 cut(s)	2467, 2519, 3008, 3173
BstNI	CCWGG	6 cut(s)	919, 2064, 2340, 2421, 2538, 2741
BstNSI	RCATGY	2 cut(s)	1231, 1459
BstPAI	GACNNNNGTC	1 cut(s)	1983
BstSCI	CCNGG	6 cut(s)	917, 2062, 2338, 2419, 2536, 2739
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	1587
BstUI	CGCG	1 cut(s)	3269
BstV1I	GCAGC	5 cut(s)	1267, 1289, 1702, 2865, 3276
BstV2I	GAAGAC	3 cut(s)	1188, 1389, 1940
BstX2I	RGATCY	7 cut(s)	80, 1242, 1363, 1622, 2689, 2842, 3205
BstYI	RGATCY	7 cut(s)	80, 1242, 1363, 1622, 2689, 2842, 3205
Bsu15I	ATCGAT	3 cut(s)	114, 815, 2208
Bsu36I	CCTNAGG	1 cut(s)	2166
BsuI	GTATCC	2 cut(s)	298, 1807
BsuRI	GGCC	2 cut(s)	1375, 2536
BsuTUI	ATCGAT	3 cut(s)	114, 815, 2208
BtgI	CCRYGG	4 cut(s)	220, 1376, 3029, 3190
BtgZI	GCGATG	1 cut(s)	2871
BtrI	CACGTC	4 cut(s)	542, 1998, 2519, 3071
BtsIMutI	CAGTG	3 cut(s)	1824, 1929, 2296
BveI	ACCTGC	4 cut(s)	161, 671, 1198, 1655
Cac8I	GCNNGC	8 cut(s)	585, 2218, 2832, 2925, 2988, 3269, 3422, 3501
CaiI	CAGNNNCTG	1 cut(s)	2227
CciI	TCATGA	1 cut(s)	3304
CfoI	GCGC	6 cut(s)	1009, 2296, 2570, 3269, 3271, 3432
Cfr10I	RCCGGY	1 cut(s)	3244
Cfr13I	GGNCC	3 cut(s)	1808, 2534, 3026
ClaI	ATCGAT	3 cut(s)	114, 815, 2208
CseI	GACGC	2 cut(s)	3235, 3473
CspAI	ACCGGT	1 cut(s)	3244
DrdI	GACNNNNNNGTC	1 cut(s)	2523
DseDI	GACNNNNNNGTC	1 cut(s)	2523
EaeI	YGGCCR	1 cut(s)	1373
Eam1104I	CTCTTC	3 cut(s)	6, 366, 776
EarI	CTCTTC	3 cut(s)	6, 366, 776
Ecl136II	GAGCTC	3 cut(s)	16, 328, 1038
Eco130I	CCWWGG	7 cut(s)	1359, 1376, 2623, 2912, 3029, 3190, 3383
Eco24I	GRGCYC	3 cut(s)	18, 330, 1040
Eco47I	GGWCC	2 cut(s)	1808, 3026
Eco53kI	GAGCTC	3 cut(s)	16, 328, 1038
Eco57I	CTGAAG	4 cut(s)	882, 1173, 1271, 2129
Eco81I	CCTNAGG	1 cut(s)	2166
Eco88I	CYCGRG	3 cut(s)	329, 2846, 3259
EcoICRI	GAGCTC	3 cut(s)	16, 328, 1038
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	6 cut(s)	917, 2062, 2338, 2419, 2536, 2739
EcoT14I	CCWWGG	7 cut(s)	1359, 1376, 2623, 2912, 3029, 3190, 3383
EcoT38I	GRGCYC	3 cut(s)	18, 330, 1040
ErhI	CCWWGG	7 cut(s)	1359, 1376, 2623, 2912, 3029, 3190, 3383
Esp3I	CGTCTC	3 cut(s)	49, 2558, 3491
FalI	AAGNNNNNCTT	5 cut(s)	1146, 1178, 1463, 1495, 3487
FaqI	GGGAC	1 cut(s)	2208
FbaI	TGATCA	5 cut(s)	274, 856, 1821, 2133, 2971
FblI	GTMKAC	2 cut(s)	1018, 1972
Fnu4HI	GCNGC	7 cut(s)	1278, 1281, 1716, 2127, 2813, 2854, 3265
FriOI	GRGCYC	3 cut(s)	18, 330, 1040
Fsp4HI	GCNGC	7 cut(s)	1278, 1281, 1716, 2127, 2813, 2854, 3265
GlaI	GCGC	6 cut(s)	1008, 2295, 2569, 3268, 3270, 3431
GluI	GCNGC	7 cut(s)	1278, 1281, 1716, 2127, 2813, 2854, 3265
GsaI	CCCAGC	1 cut(s)	1702
HaeII	RGCGCY	1 cut(s)	3433
HaeIII	GGCC	2 cut(s)	1375, 2536
HapII	CCGG	7 cut(s)	185, 199, 408, 632, 1235, 1811, 3245
HgaI	GACGC	2 cut(s)	3235, 3473
HhaI	GCGC	6 cut(s)	1009, 2296, 2570, 3269, 3271, 3432
Hin1I	GRCGYC	2 cut(s)	3126, 3484
Hin6I	GCGC	6 cut(s)	1007, 2294, 2568, 3267, 3269, 3430
HinP1I	GCGC	6 cut(s)	1007, 2294, 2568, 3267, 3269, 3430
HincII	GTYRAC	3 cut(s)	210, 1225, 2769
HindII	GTYRAC	3 cut(s)	210, 1225, 2769
HindIII	AAGCTT	3 cut(s)	1514, 2379, 3000
HpaI	GTTAAC	1 cut(s)	210
HpaII	CCGG	7 cut(s)	185, 199, 408, 632, 1235, 1811, 3245
HphI	GGTGA	9 cut(s)	281, 512, 557, 566, 1415, 1625, 1654, 2183, 2981
Hpy99I	CGWCG	4 cut(s)	366, 934, 3072, 3131
HpyCH4IV	ACGT	8 cut(s)	541, 1015, 1969, 1997, 2439, 2518, 3070, 3126
HpyF10VI	GCNNNNNNNGC	4 cut(s)	2467, 2519, 3008, 3173
HpySE526I	ACGT	8 cut(s)	541, 1015, 1969, 1997, 2439, 2518, 3070, 3126
Hsp92I	GRCGYC	2 cut(s)	3126, 3484
HspAI	GCGC	6 cut(s)	1007, 2294, 2568, 3267, 3269, 3430
Ksp22I	TGATCA	5 cut(s)	274, 856, 1821, 2133, 2971
KspAI	GTTAAC	1 cut(s)	210
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	6 cut(s)	325, 358, 1567, 2744, 3194, 3385
Lsp1109I	GCAGC	5 cut(s)	1267, 1289, 1702, 2865, 3276
MaeII	ACGT	8 cut(s)	541, 1015, 1969, 1997, 2439, 2518, 3070, 3126
MbiI	CCGCTC	4 cut(s)	1295, 1918, 2129, 2815
MflI	RGATCY	7 cut(s)	80, 1242, 1363, 1622, 2689, 2842, 3205
MhlI	GDGCHC	5 cut(s)	18, 330, 1040, 1587, 3076
MluCI	AATT	8 cut(s)	23, 62, 146, 281, 1857, 2319, 2484, 3145
MlyI	GAGTC	4 cut(s)	1279, 1343, 1639, 1968
MmeI	TCCRAC	1 cut(s)	228
MseI	TTAA	8 cut(s)	162, 209, 300, 321, 1239, 2040, 2387, 2867
MslI	CAYNNNNRTG	2 cut(s)	1932, 1934
MspA1I	CMGCKG	1 cut(s)	1280
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	7 cut(s)	185, 199, 408, 632, 1235, 1811, 3245
MspR9I	CCNGG	6 cut(s)	919, 2064, 2340, 2421, 2538, 2741
MvaI	CCWGG	6 cut(s)	919, 2064, 2340, 2421, 2538, 2741
MvnI	CGCG	1 cut(s)	3269
MwoI	GCNNNNNNNGC	4 cut(s)	2467, 2519, 3008, 3173
NcoI	CCATGG	3 cut(s)	1376, 3029, 3190
NheI	GCTAGC	2 cut(s)	2830, 2986
NlaIV	GGNNCC	1 cut(s)	2691
NmuCI	GTSAC	5 cut(s)	125, 955, 1642, 1993, 3343
NspI	RCATGY	2 cut(s)	1231, 1459
NspV	TTCGAA	1 cut(s)	3039
OliI	CACNNNNGTG	1 cut(s)	1934
PaeR7I	CTCGAG	1 cut(s)	329
PagI	TCATGA	1 cut(s)	3304
PaqCI	CACCTGC	1 cut(s)	161
PauI	GCGCGC	1 cut(s)	3267
PciI	ACATGT	1 cut(s)	1227
PciSI	GCTCTTC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	3 cut(s)	147, 2524, 2853
PfoI	TCCNGGA	2 cut(s)	917, 2062
PinAI	ACCGGT	1 cut(s)	3244
PkrI	GCNGC	7 cut(s)	1279, 1282, 1717, 2128, 2814, 2855, 3266
PleI	GAGTC	4 cut(s)	1278, 1343, 1639, 1968
PpsI	GAGTC	4 cut(s)	1278, 1343, 1639, 1968
Ppu21I	YACGTR	1 cut(s)	1016
PscI	ACATGT	1 cut(s)	1227
PshAI	GACNNNNGTC	1 cut(s)	1983
Psp124BI	GAGCTC	3 cut(s)	18, 330, 1040
Psp6I	CCWGG	6 cut(s)	917, 2062, 2338, 2419, 2536, 2739
PspFI	CCCAGC	1 cut(s)	1698
PspGI	CCWGG	6 cut(s)	917, 2062, 2338, 2419, 2536, 2739
PspN4I	GGNNCC	1 cut(s)	2691
PspPI	GGNCC	3 cut(s)	1808, 2534, 3026
PsrI	GAACNNNNNNTAC	2 cut(s)	2259, 2291
PstI	CTGCAG	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	2227
PsuI	RGATCY	7 cut(s)	80, 1242, 1363, 1622, 2689, 2842, 3205
PteI	GCGCGC	1 cut(s)	3267
PvuII	CAGCTG	1 cut(s)	1280
RseI	CAYNNNNRTG	2 cut(s)	1932, 1934
SacI	GAGCTC	3 cut(s)	18, 330, 1040
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	8 cut(s)	162, 209, 300, 321, 1239, 2040, 2387, 2867
SatI	GCNGC	7 cut(s)	1278, 1281, 1716, 2127, 2813, 2854, 3265
Sau96I	GGNCC	3 cut(s)	1808, 2534, 3026
ScaI	AGTACT	1 cut(s)	1886
SchI	GAGTC	4 cut(s)	1279, 1343, 1639, 1968
ScrFI	CCNGG	6 cut(s)	919, 2064, 2340, 2421, 2538, 2741
SduI	GDGCHC	5 cut(s)	18, 330, 1040, 1587, 3076
SfcI	CTRYAG	1 cut(s)	84
Sfr274I	CTCGAG	1 cut(s)	329
SfuI	TTCGAA	1 cut(s)	3039
SinI	GGWCC	2 cut(s)	1808, 3026
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	2 cut(s)	1932, 1934
SmlI	CTYRAG	6 cut(s)	161, 329, 1163, 1419, 2703, 3075
SmoI	CTYRAG	6 cut(s)	161, 329, 1163, 1419, 2703, 3075
Sse9I	AATT	8 cut(s)	23, 62, 146, 281, 1857, 2319, 2484, 3145
SsiI	CCGC	6 cut(s)	618, 1293, 1918, 2127, 2810, 2813
SspI	AATATT	1 cut(s)	2371
SstI	GAGCTC	3 cut(s)	18, 330, 1040
StyD4I	CCNGG	6 cut(s)	917, 2062, 2338, 2419, 2536, 2739
StyI	CCWWGG	7 cut(s)	1359, 1376, 2623, 2912, 3029, 3190, 3383
TaiI	ACGT	8 cut(s)	544, 1018, 1972, 2000, 2442, 2521, 3073, 3129
TasI	AATT	8 cut(s)	23, 62, 146, 281, 1857, 2319, 2484, 3145
TatI	WGTACW	6 cut(s)	1802, 1827, 1884, 2442, 2733, 3330
TauI	GCSGC	2 cut(s)	2129, 2815
Tru1I	TTAA	8 cut(s)	162, 209, 300, 321, 1239, 2040, 2387, 2867
Tru9I	TTAA	8 cut(s)	162, 209, 300, 321, 1239, 2040, 2387, 2867
TscAI	CASTG	3 cut(s)	1824, 1936, 2296
TseFI	GTSAC	5 cut(s)	125, 955, 1642, 1993, 3343
TseI	GCWGC	5 cut(s)	1277, 1280, 1715, 2853, 3264
Tsp45I	GTSAC	5 cut(s)	125, 955, 1642, 1993, 3343
TspGWI	ACGGA	4 cut(s)	379, 918, 2362, 3454
TspRI	CASTG	3 cut(s)	1824, 1936, 2296
Vha464I	CTTAAG	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	1583
VpaK11BI	GGWCC	2 cut(s)	1808, 3026
XapI	RAATTY	5 cut(s)	146, 281, 1857, 2319, 3145
XbaI	TCTAGA	1 cut(s)	2315
XceI	RCATGY	2 cut(s)	1231, 1459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2650
XhoI	CTCGAG	1 cut(s)	329
XmiI	GTMKAC	2 cut(s)	1018, 1972
ZraI	GACGTC	1 cut(s)	3127
ZrmI	AGTACT	1 cut(s)	1886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.