Rmu_sc0004005.1_g000001

Pre-mRNA-splicing factor ATP-dependent RNA

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004005.1
Physical Location & Seq
Forward (+)
1 .. 446
446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004005.1_g000001.1.cds

Sequence Viewer

Length: 446 bp
agccagtttatatccatccaagcagtgcgctcttccagagacaaccagattggatcatctaccatgagttggttatgactatgaaggagtatatgcgtgaggtaaccgtcgttgatcccaaatggcttgtggaactagcacccaggttcttcaaagtggctgaccctaccaagatgagtaagcgcaagcgtcaagagcgtattgaaccgctatatgacagataccatgaaccaaactcttggcgtatccattttggggtcgaagaagaaatcacagctccagcagtctccatctggctctctatttggaaacatatttgcctctgcacatctggtgcagaggagagagaaacaaagggccatttcttttgcaaggggcagaaattcaattccataaagttccagtgttgtttatttcttcacaaccgcttctgtttcaactcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

147

Amino Acids

17.66

Weight (kDa)

8.8

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000671)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 69
AciI CCGC 2 cut(s) 208, 426
AclWI GGATC 2 cut(s) 61, 109
AcsI RAATTY 1 cut(s) 382
AfiI CCNNNNNNNGG 2 cut(s) 69, 255
AgsI TTSAA 4 cut(s) 153, 205, 387, 438
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 33, 291
AlwI GGATC 2 cut(s) 61, 109
AoxI GGCC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 382
AspLEI GCGC 2 cut(s) 30, 185
AspS9I GGNCC 1 cut(s) 357
BccI CCATC 2 cut(s) 23, 298
BciT130I CCWGG 1 cut(s) 144
BciVI GTATCC 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 33, 291
BfaI CTAG 1 cut(s) 136
BfuI GTATCC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 255
Bse1I ACTGG 2 cut(s) 4, 402
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 69, 255
BseNI ACTGG 2 cut(s) 4, 402
BseRI GAGGAG 1 cut(s) 355
BsgI GTGCAG 2 cut(s) 309, 356
BshFI GGCC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 69, 255
BsmAI GTCTC 2 cut(s) 33, 291
BsnI GGCC 1 cut(s) 359
Bsp143I GATC 2 cut(s) 53, 114
BspACI CCGC 2 cut(s) 208, 426
BspANI GGCC 1 cut(s) 359
BspHI TCATGA 1 cut(s) 442
BspPI GGATC 2 cut(s) 61, 109
BspQI GCTCTTC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 4, 402
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 53, 114
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 187
BstEII GGTNACC 1 cut(s) 102
BstF5I GGATG 1 cut(s) 15
BstHHI GCGC 2 cut(s) 30, 185
BstKTI GATC 2 cut(s) 56, 117
BstMAI GTCTC 2 cut(s) 33, 291
BstMBI GATC 2 cut(s) 53, 114
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNI CCWGG 1 cut(s) 144
BstPI GGTNACC 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 239
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 359
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 409
Cac8I GCNNGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 442
CfoI GCGC 2 cut(s) 30, 185
Cfr13I GGNCC 1 cut(s) 357
CseI GACGC 1 cut(s) 178
CviAII CATG 3 cut(s) 64, 226, 443
CviJI RGCY 6 cut(s) 3, 126, 160, 277, 297, 359
CviKI_1 RGCY 6 cut(s) 3, 126, 160, 277, 297, 359
DpnI GATC 2 cut(s) 55, 116
DpnII GATC 2 cut(s) 53, 114
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco91I GGTNACC 1 cut(s) 102
EcoO65I GGTNACC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 3 cut(s) 67, 229, 446
FatI CATG 3 cut(s) 63, 225, 442
FokI GGATG 1 cut(s) 2
FspBI CTAG 1 cut(s) 136
GlaI GCGC 2 cut(s) 29, 184
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 359
HgaI GACGC 1 cut(s) 178
HhaI GCGC 2 cut(s) 30, 185
Hin1II CATG 3 cut(s) 67, 229, 446
Hin6I GCGC 2 cut(s) 28, 183
HinP1I GCGC 2 cut(s) 28, 183
Hpy188III TCNNGA 3 cut(s) 36, 193, 443
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 326, 337, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
Hsp92II CATG 3 cut(s) 67, 229, 446
HspAI GCGC 2 cut(s) 28, 183
Kzo9I GATC 2 cut(s) 53, 114
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 9 cut(s) 17, 49, 59, 129, 156, 279, 293, 317, 415
MaeI CTAG 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 102
MalI GATC 2 cut(s) 55, 116
MboI GATC 2 cut(s) 53, 114
MboII GAAGA 5 cut(s) 24, 141, 274, 277, 409
MluCI AATT 2 cut(s) 382, 387
MnlI CCTC 3 cut(s) 93, 331, 333
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 195
NdeII GATC 2 cut(s) 53, 114
NlaIII CATG 3 cut(s) 67, 229, 446
PagI TCATGA 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 37
PflMI CCANNNNNTGG 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 142
PspEI GGTNACC 1 cut(s) 102
PspGI CCWGG 1 cut(s) 142
PspPI GGNCC 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 37
Sau3AI GATC 2 cut(s) 53, 114
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 144
SetI ASST 3 cut(s) 104, 148, 279
Sse9I AATT 2 cut(s) 382, 387
SsiI CCGC 2 cut(s) 208, 426
SspMI CTAG 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 260
TasI AATT 2 cut(s) 382, 387
TscAI CASTG 2 cut(s) 30, 409
TspDTI ATGAA 2 cut(s) 97, 242
TspRI CASTG 2 cut(s) 30, 409
Van91I CCANNNNNTGG 1 cut(s) 69
XapI RAATTY 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XspI CTAG 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.