pycom08g06730

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000671
Physical Location & Seq
Reverse (-)
5260687 .. 5261094
408 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06730.1

Sequence Viewer

Length: 297 bp
ATGGACAAGTACAAACTGGACGTTTTGAGTGATTTTTCTTCCCACGCTGCTAGAAAGGACCAGCAGGAGGGTTACAGAACCCTAACGGAGAACCAGCCGGTTTATATTCACCCCAGCAGTGCTCTTTTCCAGAGACAACCGGATTGGGTCATCTACCATGAGCTGGTTAGGACTACGAAGGAGTTCATGCGCGAGCGTCCAGAACGAAATAAACCACTGTATGACAGATACAATGAGCCTAACTCTTGGCGTCTTAAATCATCTTCAAAGGAAATGTCTAAATATTCAAATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

99

Amino Acids

11.9

Weight (kDa)

9.19

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_NTP_bind PF07717 12 - 65 4.3e-17 Oligonucleotide/oligosaccharide-binding (OB)-fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26560
fragaria_vesca FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 163
AccII CGCG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 250
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 67, 163
AgsI TTSAA 2 cut(s) 267, 288
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 47
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BsaHI GRCGYC 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 163
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 67, 163
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 2 cut(s) 98, 140
BslI CCNNNNNNNGG 2 cut(s) 67, 163
BsmAI GTCTC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 124
BspFNI CGCG 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 194
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 127
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 2 cut(s) 124, 215
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 58
CseI GACGC 2 cut(s) 185, 239
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 158, 187
CviJI RGCY 3 cut(s) 97, 163, 238
CviKI_1 RGCY 3 cut(s) 97, 163, 238
CviQI GTAC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 58
FaeI CATG 2 cut(s) 161, 190
FaiI YATR 4 cut(s) 105, 159, 188, 222
FatI CATG 2 cut(s) 157, 186
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 117
HapII CCGG 2 cut(s) 98, 140
HgaI GACGC 2 cut(s) 185, 239
HhaI GCGC 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 2 cut(s) 161, 190
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HpaII CCGG 2 cut(s) 98, 140
HphI GGTGA 1 cut(s) 101
Hpy188III TCNNGA 2 cut(s) 130, 200
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 2 cut(s) 161, 190
HspAI GCGC 1 cut(s) 190
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 71
MboII GAAGA 2 cut(s) 30, 255
MhlI GDGCHC 1 cut(s) 124
MnlI CCTC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 1 cut(s) 255
MspI CCGG 2 cut(s) 98, 140
MvnI CGCG 1 cut(s) 192
NlaIII CATG 2 cut(s) 161, 190
PdmI GAANNNNTTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 163
PkrI GCNGC 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 58
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 124
SetI ASST 2 cut(s) 24, 165
SinI GGWCC 1 cut(s) 58
SspI AATATT 1 cut(s) 284
SspMI CTAG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 1 cut(s) 24
TatI WGTACW 1 cut(s) 9
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 2 cut(s) 124, 222
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 175
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 2 cut(s) 124, 222
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.