Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000671

Physical Location & Seq

Genomic Coordinates Reverse (-)

4010197 .. 4010850

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCTACTCGCTAGCGTGGACCTCGGTTGCAGCGATGAGATCTTGACCATCATTGCAATGATTCAGACAGGCAATATCTTTTACAGACCAAGAGAAAAGCAAGCCAAGGCAGATCAGAAGAGAGCCAAGTTTTTTCAGGCAGAGGAAGACCCTCTGACTTTAATCGCAGTCTGTGAGGCTTGGAAAGCAAGTAATTTTTCGGGGCCATGGTGTTTCGAGAACTTTGTTCAGTCTCGCTCCTTGAGGTGGGTGCAGGATGTCAGAAAACAGCTTCTGAGCATTATGGATAAGTACAAACTCGATGTTCTGAGAGCAGGAAGGAATTTTACGAAGATCAGGAAGGCAATTACAGCAGGGTTTTTCTTCCATGCTGCTAGAAAGGACCCGCAGGAGGGTTACAGAACCCTAACTGGGAACCAGCCGGTTTATATCCATCCAAGCAGTGCCCTTTTCCAGAGACAGCCGGATTGGGTCATCTACCATGAGCTGGTTATGACCACGAAGGAGTACATGCGCGAGGTGACAGTCATCGACCCCAAATGGCTCGTGGAACTGGCGCCCAGGTCCTGCAAATTTTCAGATCCTTCAAAGATGAGTAAGCGCCAGTGTCAAGAACGGATTGAACCGCTGTATGATAGATACAATGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

218

Amino Acids

25.41

Weight (kDa)

9.16

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HA2_C	PF21010	1 - 48	2.4e-10	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	112 - 188	3.6e-28	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26560
fragaria_vesca	FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica	MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica	Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis	pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis	RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata	RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora	Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii	Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa	Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha	Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana	Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	556
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccII	CGCG	1 cut(s)	516
AciI	CCGC	2 cut(s)	386, 626
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	2 cut(s)	322, 572
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	2 cut(s)	293, 509
AfiI	CCNNNNNNNGG	5 cut(s)	246, 391, 392, 411, 487
AgsI	TTSAA	2 cut(s)	588, 623
AjnI	CCWGG	1 cut(s)	560
AluBI	AGCT	2 cut(s)	271, 487
AluI	AGCT	2 cut(s)	271, 487
Alw26I	GTCTC	2 cut(s)	237, 451
AlwI	GGATC	1 cut(s)	575
AlwNI	CAGNNNCTG	2 cut(s)	274, 567
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	30, 371
ApoI	RAATTY	2 cut(s)	322, 572
AspLEI	GCGC	3 cut(s)	516, 559, 603
AspS9I	GGNCC	4 cut(s)	19, 203, 382, 564
AsuHPI	GGTGA	1 cut(s)	532
AsuNHI	GCTAGC	1 cut(s)	11
AvaII	GGWCC	3 cut(s)	19, 382, 564
BaeGI	GKGCMC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	556
BarI	GAAGNNNNNNTAC	2 cut(s)	310, 342
BauI	CACGAG	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	42, 358
BccI	CCATC	2 cut(s)	56, 441
BciT130I	CCWGG	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	237, 451
BfaI	CTAG	2 cut(s)	12, 375
BfoI	RGCGCY	2 cut(s)	560, 604
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	2 cut(s)	31, 372
BlsI	GCNGC	2 cut(s)	32, 373
Bme1390I	CCNGG	1 cut(s)	562
Bme18I	GGWCC	3 cut(s)	19, 382, 564
BmgT120I	GGNCC	4 cut(s)	19, 203, 382, 564
BmiI	GGNNCC	4 cut(s)	204, 384, 416, 558
BmrFI	CCNGG	1 cut(s)	562
BmrI	ACTGGG	1 cut(s)	420
BmtI	GCTAGC	1 cut(s)	15
BmuI	ACTGGG	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	557
BsaJI	CCNNGG	4 cut(s)	22, 105, 206, 560
Bsc4I	CCNNNNNNNGG	5 cut(s)	246, 391, 392, 411, 487
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	3 cut(s)	415, 558, 604
Bse3DI	GCAATG	2 cut(s)	51, 63
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	4 cut(s)	22, 105, 206, 560
BseGI	GGATG	2 cut(s)	262, 433
BseLI	CCNNNNNNNGG	5 cut(s)	246, 391, 392, 411, 487
BseMI	GCAATG	2 cut(s)	51, 63
BseMII	CTCAG	2 cut(s)	266, 299
BseNI	ACTGG	3 cut(s)	415, 558, 604
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	2 cut(s)	42, 358
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	422, 464
BslI	CCNNNNNNNGG	5 cut(s)	246, 391, 392, 411, 487
BsmAI	GTCTC	2 cut(s)	237, 451
BsnI	GGCC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	39, 112, 333, 580
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	2 cut(s)	386, 626
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	2 cut(s)	267, 300
BspFNI	CGCG	1 cut(s)	516
BspLI	GGNNCC	4 cut(s)	204, 384, 416, 558
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	556
BsrDI	GCAATG	2 cut(s)	51, 63
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	3 cut(s)	415, 558, 604
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	4 cut(s)	22, 105, 206, 560
BssMI	GATC	4 cut(s)	39, 112, 333, 580
BssNI	GRCGYC	1 cut(s)	557
BssSI	CACGAG	1 cut(s)	545
BssT1I	CCWWGG	2 cut(s)	105, 206
Bst2BI	CACGAG	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	13, 102
BstDEI	CTNAG	2 cut(s)	275, 308
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	262, 433
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	2 cut(s)	560, 604
BstHHI	GCGC	3 cut(s)	516, 559, 603
BstKTI	GATC	4 cut(s)	42, 115, 336, 583
BstMAI	GTCTC	2 cut(s)	237, 451
BstMBI	GATC	4 cut(s)	39, 112, 333, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 350
BstNI	CCWGG	1 cut(s)	562
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	448
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	42, 358
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	2 cut(s)	39, 580
BstYI	RGATCY	2 cut(s)	39, 580
BsuRI	GGCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	262, 433
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	2 cut(s)	448, 611
Cac8I	GCNNGC	2 cut(s)	13, 102
CaiI	CAGNNNCTG	2 cut(s)	274, 567
CfoI	GCGC	3 cut(s)	516, 559, 603
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	4 cut(s)	19, 203, 382, 564
Csp6I	GTAC	2 cut(s)	292, 508
CviAII	CATG	4 cut(s)	207, 368, 482, 511
CviQI	GTAC	2 cut(s)	292, 508
DdeI	CTNAG	2 cut(s)	275, 308
DinI	GGCGCC	1 cut(s)	558
DpnI	GATC	4 cut(s)	41, 114, 335, 582
DpnII	GATC	4 cut(s)	39, 112, 333, 580
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	2 cut(s)	105, 206
Eco47I	GGWCC	3 cut(s)	19, 382, 564
EcoO109I	RGGNCCY	2 cut(s)	382, 564
EcoRII	CCWGG	1 cut(s)	560
EcoT14I	CCWWGG	2 cut(s)	105, 206
EgeI	GGCGCC	1 cut(s)	558
EheI	GGCGCC	1 cut(s)	558
ErhI	CCWWGG	2 cut(s)	105, 206
FaeI	CATG	4 cut(s)	210, 371, 485, 514
FaiI	YATR	8 cut(s)	208, 284, 369, 429, 483, 494, 512, 633
FatI	CATG	4 cut(s)	206, 367, 481, 510
FauI	CCCGC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	31, 372
FokI	GGATG	2 cut(s)	269, 420
Fsp4HI	GCNGC	2 cut(s)	31, 372
FspBI	CTAG	2 cut(s)	12, 375
GlaI	GCGC	3 cut(s)	515, 558, 602
GluI	GCNGC	2 cut(s)	31, 372
HaeII	RGCGCY	2 cut(s)	560, 604
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	2 cut(s)	422, 464
HhaI	GCGC	3 cut(s)	516, 559, 603
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	4 cut(s)	210, 371, 485, 514
Hin6I	GCGC	3 cut(s)	514, 557, 601
HinP1I	GCGC	3 cut(s)	514, 557, 601
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	2 cut(s)	422, 464
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	7 cut(s)	66, 117, 156, 263, 276, 309, 580
Hpy188III	TCNNGA	5 cut(s)	43, 217, 337, 454, 611
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	312, 334, 496, 594
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4V	TGCA	4 cut(s)	30, 56, 253, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 350
HpyF3I	CTNAG	2 cut(s)	275, 308
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	4 cut(s)	210, 371, 485, 514
HspAI	GCGC	3 cut(s)	514, 557, 601
KasI	GGCGCC	1 cut(s)	556
Kzo9I	GATC	4 cut(s)	39, 112, 333, 580
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	2 cut(s)	42, 358
MaeI	CTAG	2 cut(s)	12, 375
MaeIII	GTNAC	2 cut(s)	395, 520
MalI	GATC	4 cut(s)	41, 114, 335, 582
MboI	GATC	4 cut(s)	39, 112, 333, 580
MboII	GAAGA	4 cut(s)	130, 158, 343, 355
MflI	RGATCY	2 cut(s)	39, 580
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	4 cut(s)	193, 322, 345, 572
Mly113I	GGCGCC	1 cut(s)	557
MnlI	CCTC	7 cut(s)	32, 136, 162, 169, 237, 385, 511
MseI	TTAA	2 cut(s)	161, 652
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	2 cut(s)	422, 464
MspR9I	CCNGG	1 cut(s)	562
MvaI	CCWGG	1 cut(s)	562
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	2 cut(s)	185, 350
NarI	GGCGCC	1 cut(s)	557
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	4 cut(s)	39, 112, 333, 580
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	4 cut(s)	210, 371, 485, 514
NlaIV	GGNNCC	4 cut(s)	204, 384, 416, 558
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	487
PkrI	GCNGC	2 cut(s)	32, 373
PluTI	GGCGCC	1 cut(s)	560
PpuMI	RGGWCCY	2 cut(s)	382, 564
Psp5II	RGGWCCY	2 cut(s)	382, 564
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	4 cut(s)	204, 384, 416, 558
PspPI	GGNCC	4 cut(s)	19, 203, 382, 564
PspPPI	RGGWCCY	2 cut(s)	382, 564
PstNI	CAGNNNCTG	2 cut(s)	274, 567
PsuI	RGATCY	2 cut(s)	39, 580
RsaI	GTAC	2 cut(s)	293, 509
RsaNI	GTAC	2 cut(s)	292, 508
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	161, 652
SatI	GCNGC	2 cut(s)	31, 372
Sau3AI	GATC	4 cut(s)	39, 112, 333, 580
Sau96I	GGNCC	4 cut(s)	19, 203, 382, 564
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	448
SetI	ASST	6 cut(s)	24, 248, 273, 489, 522, 566
SfoI	GGCGCC	1 cut(s)	558
SinI	GGWCC	3 cut(s)	19, 382, 564
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	4 cut(s)	193, 322, 345, 572
SsiI	CCGC	2 cut(s)	386, 626
SspDI	GGCGCC	1 cut(s)	556
SspMI	CTAG	2 cut(s)	12, 375
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	2 cut(s)	105, 206
TaaI	ACNGT	1 cut(s)	526
TaqI	TCGA	3 cut(s)	216, 300, 531
TasI	AATT	4 cut(s)	193, 322, 345, 572
TatI	WGTACW	2 cut(s)	291, 507
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	161, 652
Tru9I	TTAA	2 cut(s)	161, 652
TscAI	CASTG	2 cut(s)	448, 611
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	2 cut(s)	30, 371
Tsp45I	GTSAC	1 cut(s)	520
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	2 cut(s)	448, 611
Van91I	CCANNNNNTGG	1 cut(s)	487
VpaK11BI	GGWCC	3 cut(s)	19, 382, 564
XapI	RAATTY	2 cut(s)	322, 572
XceI	RCATGY	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	2 cut(s)	12, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.