Rmu_co8434143.1_g000001

Pre-mRNA-splicing factor ATP-dependent RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8434143.1
OG0000671
Physical Location & Seq
Reverse (-)
2 .. 1364
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8434143.1_g000001.1.cds

Sequence Viewer

Length: 1363 bp
atggacacaggttgttttgttcagttcagcgattttagagggaaggagggtttggttcatgtttcgcagattgctactcggcgaattggtaatgctaaagatgtggtgaagagagatcaagaggtctatgttaaggtgatttcaatttctggtcaaaagttgagcctgtcaatgagggatgttgatcagcatactgggaaggatttgctacctttgaagaagaactcagaggatgattctcttaggacaaacccgtcgatatcaaaggatgatgggcctgtgacaaggacgggtctctctgggattaggattgtggaagaggatgttactgccccatctcgccggccattgaagagaatgagctcaccggagaagtgggaagccaaacagttgattgcctcgggtgttttgggtgtcaaagagtatccaatgtatgatgaagaaacagatgggatgctttatgaagaagagggagctgaggaagaacttgagattgagcttaatgaggatgagccagccttcttgcaagggcaaaccaggtattctgcagatatgtcacctgtgaaaatatttaagaatccagaagggtcattgagtcgtgcagctgcacttcaatctgcactcattaaggagcgtagagaagtgcgtgagcagcagcaaagaaccatgttggattcaatcccaaaggatctgaatcgtccttgggaagatccaatgccagagactggtgagaggcatcttgcacaggaacttagaggtgttggtttgtcggcctatgacatgcctgagtggaagaaggatgcttttgggaagactgtcacttttgggcagaggtcaaagctttcaattcaggaacagaggcagagcttgcctatctataagctgaagaaagaattggttcaggcagtgcatgaaaatcaagttcttgttgtcattggtgagactggttcaggcaagacaacccaggtaacacagtatcttgcagaagctgggtacacgacaatgggtaagattgggtgtacacagccacgtagggtggctgcaatgtctgtagccaagagggttgctgaagagtttggttgtcgtctgggggaggaagttggatatgctattcgttttgaggattgcactggacctgatactgtaatcaagtacatgacggatggtatgcttcttagggagattctgcttgacgagaacctttctcagtactctgtggtcatgcttgatgaagctcatgagaggacaatccatacagatgttctttttggattattgaagaaacttgtgaagcggagaccagaccttcgtttgattgtcacatctgctaccttggatgctgagaagttttcaggttatttct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

454

Amino Acids

51.13

Weight (kDa)

5.51

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26560
fragaria_vesca FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 253
AccB7I CCANNNNNTGG 1 cut(s) 725
AciI CCGC 1 cut(s) 1294
AclWI GGATC 2 cut(s) 696, 704
AcoI YGGCCR 1 cut(s) 344
AcuI CTGAAG 2 cut(s) 905, 1089
AfaI GTAC 4 cut(s) 995, 1021, 1154, 1211
AfiI CCNNNNNNNGG 1 cut(s) 725
AgsI TTSAA 7 cut(s) 144, 217, 352, 614, 678, 846, 1279
AjnI CCWGG 2 cut(s) 536, 963
AjuI GAANNNNNNNTTGG 4 cut(s) 35, 67, 878, 910
AluBI AGCT 9 cut(s) 363, 476, 499, 605, 841, 867, 883, 989, 1235
AluI AGCT 9 cut(s) 363, 476, 499, 605, 841, 867, 883, 989, 1235
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 4 cut(s) 299, 716, 935, 1291
AlwI GGATC 2 cut(s) 696, 704
AlwNI CAGNNNCTG 2 cut(s) 725, 989
Ama87I CYCGRG 1 cut(s) 400
AoxI GGCC 3 cut(s) 275, 344, 771
ApeKI GCWGC 5 cut(s) 602, 605, 652, 655, 1040
ArsI GACNNNNNNTTYG 2 cut(s) 1290, 1322
Asp700I GAANNNNTTC 1 cut(s) 897
AspS9I GGNCC 2 cut(s) 275, 1133
AsuHPI GGTGA 6 cut(s) 118, 148, 357, 549, 740, 950
AvaI CYCGRG 1 cut(s) 400
AvaII GGWCC 1 cut(s) 1133
BanII GRGCYC 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 818
Bbv12I GWGCWC 1 cut(s) 365
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 5 cut(s) 592, 614, 664, 667, 1027
BccI CCATC 4 cut(s) 266, 343, 443, 1157
BciT130I CCWGG 2 cut(s) 538, 965
BciVI GTATCC 1 cut(s) 435
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 4 cut(s) 299, 716, 935, 1291
BfmI CTRYAG 2 cut(s) 546, 1050
BfuI GTATCC 1 cut(s) 435
BisI GCNGC 5 cut(s) 603, 606, 653, 656, 1041
BlsI GCNGC 5 cut(s) 604, 607, 654, 657, 1042
BmcAI AGTACT 1 cut(s) 1211
Bme1390I CCNGG 2 cut(s) 538, 965
Bme18I GGWCC 1 cut(s) 1133
BmeT110I CYCGRG 1 cut(s) 400
BmgT120I GGNCC 2 cut(s) 275, 1133
BmrFI CCNGG 2 cut(s) 538, 965
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 4 cut(s) 444, 745, 790, 1327
BmuI ACTGGG 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 818
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 509
BsaAI YACGTR 1 cut(s) 1031
BsaBI GATNNNNATC 2 cut(s) 183, 693
BsaI GGTCTC 2 cut(s) 299, 1291
BsaJI CCNNGG 4 cut(s) 399, 701, 963, 1332
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse118I RCCGGY 1 cut(s) 342
Bse1I ACTGG 4 cut(s) 199, 730, 949, 1135
Bse3DI GCAATG 1 cut(s) 1050
Bse8I GATNNNNATC 2 cut(s) 183, 693
BseBI CCWGG 2 cut(s) 538, 965
BseDI CCNNGG 4 cut(s) 399, 701, 963, 1332
BseGI GGATG 9 cut(s) 184, 238, 274, 328, 459, 514, 805, 1168, 1342
BseJI GATNNNNATC 2 cut(s) 183, 693
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMI GCAATG 1 cut(s) 1050
BseMII CTCAG 5 cut(s) 240, 468, 777, 1220, 1332
BseNI ACTGG 4 cut(s) 199, 730, 949, 1135
BseXI GCAGC 5 cut(s) 592, 614, 664, 667, 1027
BseYI CCCAGC 1 cut(s) 989
BsgI GTGCAG 3 cut(s) 591, 603, 621
BshFI GGCC 3 cut(s) 277, 346, 773
BsiHKAI GWGCWC 1 cut(s) 365
BsiHKCI CYCGRG 1 cut(s) 400
BsiSI CCGG 2 cut(s) 343, 368
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 4 cut(s) 299, 716, 935, 1291
BsnI GGCC 3 cut(s) 277, 346, 773
Bso31I GGTCTC 2 cut(s) 299, 1291
BsoBI CYCGRG 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 365
Bsp1407I TGTACA 1 cut(s) 1019
Bsp143I GATC 4 cut(s) 115, 184, 688, 709
BspACI CCGC 1 cut(s) 1294
BspANI GGCC 3 cut(s) 277, 346, 773
BspCNI CTCAG 5 cut(s) 239, 469, 778, 1219, 1333
BspHI TCATGA 1 cut(s) 1237
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 2 cut(s) 696, 704
BspTNI GGTCTC 2 cut(s) 299, 1291
BsrDI GCAATG 1 cut(s) 1050
BsrFI RCCGGY 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 1019
BsrI ACTGG 4 cut(s) 199, 730, 949, 1135
BssAI RCCGGY 1 cut(s) 342
BssECI CCNNGG 4 cut(s) 399, 701, 963, 1332
BssMI GATC 4 cut(s) 115, 184, 688, 709
BssT1I CCWWGG 2 cut(s) 701, 1332
Bst2UI CCWGG 2 cut(s) 538, 965
Bst4CI ACNGT 4 cut(s) 390, 817, 975, 1144
Bst6I CTCTTC 5 cut(s) 104, 312, 347, 462, 1065
BstAPI GCANNNNNTGC 1 cut(s) 868
BstAUI TGTACA 1 cut(s) 1019
BstBAI YACGTR 1 cut(s) 1031
BstC8I GCNNGC 3 cut(s) 344, 516, 869
BstDEI CTNAG 8 cut(s) 226, 242, 477, 752, 786, 1175, 1206, 1341
BstF5I GGATG 9 cut(s) 184, 238, 274, 328, 459, 514, 805, 1168, 1342
BstKTI GATC 4 cut(s) 118, 187, 691, 712
BstMAI GTCTC 4 cut(s) 299, 716, 935, 1291
BstMBI GATC 4 cut(s) 115, 184, 688, 709
BstMWI GCNNNNNNNGC 2 cut(s) 652, 868
BstNI CCWGG 2 cut(s) 538, 965
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 2 cut(s) 536, 963
BstSFI CTRYAG 2 cut(s) 546, 1050
BstV1I GCAGC 5 cut(s) 592, 614, 664, 667, 1027
BstV2I GAAGAC 1 cut(s) 818
BstX2I RGATCY 2 cut(s) 688, 709
BstYI RGATCY 2 cut(s) 688, 709
BsuI GTATCC 1 cut(s) 435
BsuRI GGCC 3 cut(s) 277, 346, 773
BtsCI GGATG 9 cut(s) 184, 238, 274, 328, 459, 514, 805, 1168, 1342
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 2 cut(s) 912, 1128
Cac8I GCNNGC 3 cut(s) 344, 516, 869
CaiI CAGNNNCTG 2 cut(s) 725, 989
CciI TCATGA 1 cut(s) 1237
Cfr10I RCCGGY 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 275, 1133
CsiI ACCWGGT 1 cut(s) 536
Csp6I GTAC 4 cut(s) 994, 1020, 1153, 1210
CviAII CATG 7 cut(s) 59, 667, 781, 911, 1156, 1222, 1238
CviQI GTAC 4 cut(s) 994, 1020, 1153, 1210
DdeI CTNAG 8 cut(s) 226, 242, 477, 752, 786, 1175, 1206, 1341
DpnI GATC 4 cut(s) 117, 186, 690, 711
DpnII GATC 4 cut(s) 115, 184, 688, 709
DrdI GACNNNNNNGTC 1 cut(s) 253
DseDI GACNNNNNNGTC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 344
Eam1104I CTCTTC 5 cut(s) 104, 312, 347, 462, 1065
EarI CTCTTC 5 cut(s) 104, 312, 347, 462, 1065
Ecl136II GAGCTC 1 cut(s) 363
Eco130I CCWWGG 2 cut(s) 701, 1332
Eco24I GRGCYC 1 cut(s) 365
Eco31I GGTCTC 2 cut(s) 299, 1291
Eco32I GATATC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 1133
Eco53kI GAGCTC 1 cut(s) 363
Eco57I CTGAAG 2 cut(s) 905, 1089
Eco88I CYCGRG 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 536, 963
EcoRV GATATC 1 cut(s) 261
EcoT14I CCWWGG 2 cut(s) 701, 1332
EcoT38I GRGCYC 1 cut(s) 365
ErhI CCWWGG 2 cut(s) 701, 1332
FaeI CATG 7 cut(s) 62, 670, 784, 914, 1159, 1225, 1241
FatI CATG 7 cut(s) 58, 666, 780, 910, 1155, 1221, 1237
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 5 cut(s) 603, 606, 653, 656, 1041
FokI GGATG 9 cut(s) 191, 245, 281, 335, 466, 521, 812, 1175, 1349
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 5 cut(s) 603, 606, 653, 656, 1041
GluI GCNGC 5 cut(s) 603, 606, 653, 656, 1041
GsaI CCCAGC 1 cut(s) 993
HaeIII GGCC 3 cut(s) 277, 346, 773
HapII CCGG 2 cut(s) 343, 368
Hin1II CATG 7 cut(s) 62, 670, 784, 914, 1159, 1225, 1241
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 6 cut(s) 236, 577, 595, 674, 694, 1183
HpaII CCGG 2 cut(s) 343, 368
HphI GGTGA 6 cut(s) 118, 148, 357, 549, 740, 950
Hpy166II GTNNAC 3 cut(s) 996, 1020, 1022
Hpy188I TCNGA 2 cut(s) 229, 693
Hpy188III TCNNGA 4 cut(s) 119, 581, 851, 1238
Hpy8I GTNNAC 3 cut(s) 996, 1020, 1022
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 6 cut(s) 37, 193, 529, 578, 790, 1316
HpyCH4III ACNGT 4 cut(s) 390, 817, 975, 1144
HpyCH4IV ACGT 1 cut(s) 1030
HpyF10VI GCNNNNNNNGC 2 cut(s) 652, 868
HpyF3I CTNAG 8 cut(s) 226, 242, 477, 752, 786, 1175, 1206, 1341
HpySE526I ACGT 1 cut(s) 1030
Hsp92II CATG 7 cut(s) 62, 670, 784, 914, 1159, 1225, 1241
KroI GCCGGC 1 cut(s) 342
KroNI GCCGGC 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 4 cut(s) 115, 184, 688, 709
LmnI GCTCC 2 cut(s) 473, 631
Lsp1109I GCAGC 5 cut(s) 592, 614, 664, 667, 1027
LweI GCATC 4 cut(s) 444, 745, 790, 1327
MabI ACCWGGT 1 cut(s) 536
MaeII ACGT 1 cut(s) 1030
MaeIII GTNAC 6 cut(s) 280, 325, 555, 817, 967, 1318
MalI GATC 4 cut(s) 117, 186, 690, 711
MboI GATC 4 cut(s) 115, 184, 688, 709
MflI RGATCY 2 cut(s) 688, 709
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 4 cut(s) 84, 144, 846, 893
MlyI GAGTC 1 cut(s) 604
MmeI TCCRAC 2 cut(s) 651, 1081
MroNI GCCGGC 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 897
MseI TTAA 4 cut(s) 132, 501, 573, 627
MslI CAYNNNNRTG 2 cut(s) 1001, 1257
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 2 cut(s) 343, 368
MspR9I CCNGG 2 cut(s) 538, 965
MvaI CCWGG 2 cut(s) 538, 965
MwoI GCNNNNNNNGC 2 cut(s) 652, 868
NaeI GCCGGC 1 cut(s) 344
NdeII GATC 4 cut(s) 115, 184, 688, 709
NgoMIV GCCGGC 1 cut(s) 342
NlaIII CATG 7 cut(s) 62, 670, 784, 914, 1159, 1225, 1241
NmeAIII GCCGAG 1 cut(s) 58
NmuCI GTSAC 4 cut(s) 280, 555, 817, 1318
NspI RCATGY 1 cut(s) 784
PagI TCATGA 1 cut(s) 1237
PdiI GCCGGC 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 897
PfeI GAWTC 5 cut(s) 236, 577, 674, 694, 1183
PflMI CCANNNNNTGG 1 cut(s) 725
PkrI GCNGC 5 cut(s) 604, 607, 654, 657, 1042
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
Ppu21I YACGTR 1 cut(s) 1031
Psp124BI GAGCTC 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 536, 963
PspFI CCCAGC 1 cut(s) 989
PspGI CCWGG 2 cut(s) 536, 963
PspPI GGNCC 2 cut(s) 275, 1133
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 2 cut(s) 725, 989
PsuI RGATCY 2 cut(s) 688, 709
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 4 cut(s) 995, 1021, 1154, 1211
RsaNI GTAC 4 cut(s) 994, 1020, 1153, 1210
RseI CAYNNNNRTG 2 cut(s) 1001, 1257
SacI GAGCTC 1 cut(s) 365
SaqAI TTAA 4 cut(s) 132, 501, 573, 627
SatI GCNGC 5 cut(s) 603, 606, 653, 656, 1041
Sau3AI GATC 4 cut(s) 115, 184, 688, 709
Sau96I GGNCC 2 cut(s) 275, 1133
ScaI AGTACT 1 cut(s) 1211
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 2 cut(s) 538, 965
SduI GDGCHC 1 cut(s) 365
SexAI ACCWGGT 1 cut(s) 536
SfaNI GCATC 4 cut(s) 444, 745, 790, 1327
SfcI CTRYAG 2 cut(s) 546, 1050
SinI GGWCC 1 cut(s) 1133
SmiMI CAYNNNNRTG 2 cut(s) 1001, 1257
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 4 cut(s) 84, 144, 846, 893
SsiI CCGC 1 cut(s) 1294
SspI AATATT 1 cut(s) 570
SstI GAGCTC 1 cut(s) 365
StyD4I CCNGG 2 cut(s) 536, 963
StyI CCWWGG 2 cut(s) 701, 1332
TaaI ACNGT 4 cut(s) 390, 817, 975, 1144
TaiI ACGT 1 cut(s) 1033
TaqI TCGA 1 cut(s) 257
TasI AATT 4 cut(s) 84, 144, 846, 893
TatI WGTACW 3 cut(s) 1019, 1152, 1209
TfiI GAWTC 5 cut(s) 236, 577, 674, 694, 1183
Tru1I TTAA 4 cut(s) 132, 501, 573, 627
Tru9I TTAA 4 cut(s) 132, 501, 573, 627
TscAI CASTG 2 cut(s) 912, 1135
TseFI GTSAC 4 cut(s) 280, 555, 817, 1318
TseI GCWGC 5 cut(s) 602, 605, 652, 655, 1040
Tsp45I GTSAC 4 cut(s) 280, 555, 817, 1318
TspDTI ATGAA 5 cut(s) 47, 453, 477, 927, 1245
TspGWI ACGGA 1 cut(s) 1175
TspRI CASTG 2 cut(s) 912, 1135
Van91I CCANNNNNTGG 1 cut(s) 725
VpaK11BI GGWCC 1 cut(s) 1133
XceI RCATGY 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 897
ZrmI AGTACT 1 cut(s) 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.