Rorug05G0476900

Pre-mRNA-splicing factor ATP-dependent RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000671
Physical Location & Seq
Reverse (-)
65639798 .. 65642477
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0476900.1

Sequence Viewer

Length: 1602 bp
ATGACTCCCATCACCCAACACCGTACATTTCAATCCTCGCCAGATTTGTACACAAGGCTGATCGGAATCTACTCTCGTGATCGAGAATTGCAGTCAGCAAGGCTACTCCACGCCCATTTGATCACCACCGGGTTGGCCCGTTTGACCCATTTCGCCTCCAAGCTTATAGCTTTGTACGCTTCCTGCGGCCAAGTAGCCCATGCCCGGAACCTGTTCGACCAAATTCCCAAGACGAACATACGCCGCTGGTTTGCTCTGATCGGAGCCTACGCTCGCTCTGGGTTTTATCAGCAAGCCATGGATGTGTTCAGTGAGATGCAAAGAGCCGGTTCGAGGCCGAATAGGATTGTTATTCCCAGTGTTCTCAAGGCATGTGGGCATCTCTCTGATGTTAAAACCGGTGAGAAACTACATGCTGTTGTGCTCAGGCAGTCGTTTGAGTTCGATGCTTTTATTGGCAGCGCGCTTGTTGACATGTACTCGAAGAATGGGAGCGTGGAGAAAGCACGCCGGGTTTTTGATATGATGGTGGAGAAAGATTTGGTGGCTTTGAATGCTATTGTTTCGGGGTTTTGTCAGCATGGCATGGCGGAAGAAGCATTGGTTTTGGTGGAGGAAATGAAGCTGGTGGGGATTAAGCCTAATTTGATTACTTGGAACACTTTGGTTGCTGGGTTTTCGCAGAAGGGTGATGAAGCAATGGCCTCTAGGCTGTTTAAGTTGATGCGCGTGAATGGGATTGAGCCTGATGTTGTTTCTTGGACTTCGGTTATATCTGGGTTTGTGAAGAATTTTCAAAACAGTAAGGCTTTTTATACATTTAAGCAAATGTTGGATCATGGAATATGTCCAACTTCAGCTACGATTAGTAGCCTGTTGCCTGCTTGTGCAGCTGTGGCGAACTTGAGGTCTGGTAAGGAGATACATGCTTATGCATTGGTGACTGGAGTTGAAGCTGATGTATATGTGAGGAGTGCTCTTGTTGATATGTATGCGAAATGCGGATTTATATATGAAGCAAAGACATTGTTTTGCAAGATGTCTGAAAGGAACACCGTAACGTGGAACTCAATGATTTTTGGATACGCGAATCATGGGTATTGCACTGAAGCAATTGAGCTTTTCAACAAGATGAAGACAGAAGACAACAGGAAACTTGATTACTTGACTTTCGTAGCAGTCCTTACTGCTTGTTCTCATGCTGGAATTATTGAACTTGGCAAAAGCTTGTTTAGTTCGATGCAGGAAGAACATGGGATCATGCCAAGACTAGAACATTATGCATGTATGGTTGATCTTCTAGGTCGATTAGGGAATCTCACTGAGGCATATGATATGATTAAGGCAATGCCCATGGAGCCAGATTTGTTTGTATGGGGAGCATTATTAGGAGCAAGTCGGAACTATGGGAATATAGAACTTGCTGAGATAGCAGCTAAGCATTTGTCAGAGCTAGAGCCGGAGAGTGCAGGAAACAATTTGCTATTATCAAGTCTATATGCAGATGCTGGAAATTGGGTAAATGTTGCAAGGTTGAAGAAAATGATGAAGAAAAAGAAGTTAAGGAAACTACCAGGATGCAGTTGGACGGAAGCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

533

Amino Acids

59.33

Weight (kDa)

8.78

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 177 - 208 2.2e-06 PPR repeat
PPR_2 PF13041 180 - 218 5.6e-08 PPR repeat family
PPR_long PF17177 197 - 299 1.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 203 - 264 4.8e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 214 - 261 1.8e-10 PPR repeat family
PPR_3 PF13812 238 - 296 1.6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 249 - 297 2.1e-10 PPR repeat family
PPR_2 PF13041 350 - 399 1e-08 PPR repeat family
PPR_1 PF12854 350 - 379 2.4e-06 PPR repeat
PPR PF01535 353 - 381 1.1e-08 PPR repeat
E_motif PF20431 469 - 531 2.2e-20 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26560
fragaria_vesca FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 464, 729, 1088
AciI CCGC 4 cut(s) 186, 244, 590, 1002
AclWI GGATC 2 cut(s) 843, 1265
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 2 cut(s) 222, 790
AcuI CTGAAG 2 cut(s) 840, 1128
AfaI GTAC 4 cut(s) 25, 50, 176, 479
AfiI CCNNNNNNNGG 3 cut(s) 204, 333, 1062
AflIII ACRYGT 1 cut(s) 474
AgeI ACCGGT 1 cut(s) 398
AgsI TTSAA 7 cut(s) 32, 553, 797, 953, 1126, 1214, 1537
AjnI CCWGG 1 cut(s) 1573
Alw21I GWGCWC 2 cut(s) 426, 979
AlwI GGATC 2 cut(s) 843, 1265
AlwNI CAGNNNCTG 1 cut(s) 1508
AoxI GGCC 4 cut(s) 135, 187, 335, 702
ApeKI GCWGC 4 cut(s) 459, 890, 1433, 1595
ApoI RAATTY 2 cut(s) 222, 790
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
AsiGI ACCGGT 1 cut(s) 398
Asp700I GAANNNNTTC 1 cut(s) 212
AspLEI GCGC 3 cut(s) 464, 466, 729
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 3 cut(s) 130, 205, 512
AsuHPI GGTGA 5 cut(s) 4, 115, 413, 701, 952
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 2 cut(s) 1142, 1149
Bbv12I GWGCWC 2 cut(s) 426, 979
BbvI GCAGC 4 cut(s) 471, 902, 1445, 1582
BccI CCATC 2 cut(s) 17, 520
BciT130I CCWGG 1 cut(s) 1575
BciVI GTATCC 1 cut(s) 1076
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 3 cut(s) 130, 205, 512
BfaI CTAG 4 cut(s) 708, 1271, 1301, 1454
BfuI GTATCC 1 cut(s) 1076
BisI GCNGC 6 cut(s) 187, 244, 460, 891, 1434, 1596
BlpI GCTNAGC 1 cut(s) 1437
BlsI GCNGC 6 cut(s) 188, 245, 461, 892, 1435, 1597
Bme1390I CCNGG 4 cut(s) 130, 205, 512, 1575
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 3 cut(s) 209, 265, 1359
BmrFI CCNGG 4 cut(s) 130, 205, 512, 1575
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 7 cut(s) 306, 388, 436, 714, 1230, 1495, 1568
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 2 cut(s) 1142, 1149
BplI GAGNNNNNCTC 2 cut(s) 961, 993
BpmI CTGGAG 1 cut(s) 966
Bpu10I CCTNAGC 1 cut(s) 425
Bpu1102I GCTNAGC 1 cut(s) 1437
BpuEI CTTGAG 2 cut(s) 350, 925
BpuMI CCSGG 3 cut(s) 130, 205, 512
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 297, 1353
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 333, 1062
Bse118I RCCGGY 2 cut(s) 326, 398
Bse1I ACTGG 2 cut(s) 357, 949
Bse3DI GCAATG 2 cut(s) 705, 1353
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 1 cut(s) 1575
BseDI CCNNGG 2 cut(s) 297, 1353
BseGI GGATG 2 cut(s) 307, 1583
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 3 cut(s) 204, 333, 1062
BseMI GCAATG 2 cut(s) 705, 1353
BseMII CTCAG 3 cut(s) 439, 1314, 1416
BseNI ACTGG 2 cut(s) 357, 949
BsePI GCGCGC 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 985
BseXI GCAGC 4 cut(s) 471, 902, 1445, 1582
BseYI CCCAGC 1 cut(s) 671
BsgI GTGCAG 2 cut(s) 909, 1488
Bsh1236I CGCG 3 cut(s) 464, 729, 1088
BshFI GGCC 4 cut(s) 137, 189, 337, 704
BshTI ACCGGT 1 cut(s) 398
BsiHKAI GWGCWC 2 cut(s) 426, 979
BsiSI CCGG 6 cut(s) 129, 205, 327, 399, 511, 1460
BslI CCNNNNNNNGG 3 cut(s) 204, 333, 1062
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 4 cut(s) 137, 189, 337, 704
Bsp1286I GDGCHC 2 cut(s) 426, 979
Bsp1407I TGTACA 1 cut(s) 48
Bsp143I GATC 7 cut(s) 60, 79, 120, 258, 835, 1257, 1294
Bsp1720I GCTNAGC 1 cut(s) 1437
Bsp19I CCATGG 2 cut(s) 297, 1353
BspACI CCGC 4 cut(s) 186, 244, 590, 1002
BspANI GGCC 4 cut(s) 137, 189, 337, 704
BspCNI CTCAG 3 cut(s) 438, 1315, 1417
BspFNI CGCG 3 cut(s) 464, 729, 1088
BspLI GGNNCC 3 cut(s) 209, 265, 1359
BspPI GGATC 2 cut(s) 843, 1265
BsrDI GCAATG 2 cut(s) 705, 1353
BsrFI RCCGGY 2 cut(s) 326, 398
BsrGI TGTACA 1 cut(s) 48
BsrI ACTGG 2 cut(s) 357, 949
BssAI RCCGGY 2 cut(s) 326, 398
BssECI CCNNGG 2 cut(s) 297, 1353
BssHII GCGCGC 1 cut(s) 462
BssMI GATC 7 cut(s) 60, 79, 120, 258, 835, 1257, 1294
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 297, 1353
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 1575
Bst4CI ACNGT 3 cut(s) 23, 803, 1057
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 5 cut(s) 274, 294, 464, 508, 882
BstDEI CTNAG 4 cut(s) 425, 1323, 1425, 1437
BstDSI CCRYGG 2 cut(s) 297, 1353
BstF5I GGATG 2 cut(s) 307, 1583
BstFNI CGCG 3 cut(s) 464, 729, 1088
BstHHI GCGC 3 cut(s) 464, 466, 729
BstKTI GATC 7 cut(s) 63, 82, 123, 261, 838, 1260, 1297
BstMBI GATC 7 cut(s) 60, 79, 120, 258, 835, 1257, 1294
BstMWI GCNNNNNNNGC 7 cut(s) 176, 554, 596, 890, 896, 1357, 1430
BstNI CCWGG 1 cut(s) 1575
BstNSI RCATGY 5 cut(s) 375, 416, 478, 929, 1287
BstSCI CCNGG 4 cut(s) 128, 203, 510, 1573
BstUI CGCG 3 cut(s) 464, 729, 1088
BstV1I GCAGC 4 cut(s) 471, 902, 1445, 1582
BstV2I GAAGAC 2 cut(s) 1142, 1149
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuI GTATCC 1 cut(s) 1076
BsuRI GGCC 4 cut(s) 137, 189, 337, 704
BtgI CCRYGG 2 cut(s) 297, 1353
BtsCI GGATG 2 cut(s) 307, 1583
BtsIMutI CAGTG 4 cut(s) 316, 364, 1104, 1320
Cac8I GCNNGC 5 cut(s) 274, 294, 464, 508, 882
CaiI CAGNNNCTG 1 cut(s) 1508
CfoI GCGC 3 cut(s) 464, 466, 729
Cfr10I RCCGGY 2 cut(s) 326, 398
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 4 cut(s) 24, 49, 175, 478
CspAI ACCGGT 1 cut(s) 398
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviQI GTAC 4 cut(s) 24, 49, 175, 478
DdeI CTNAG 4 cut(s) 425, 1323, 1425, 1437
DpnI GATC 7 cut(s) 62, 81, 122, 260, 837, 1259, 1296
DpnII GATC 7 cut(s) 60, 79, 120, 258, 835, 1257, 1294
EaeI YGGCCR 1 cut(s) 187
EciI GGCGGA 1 cut(s) 605
Eco130I CCWWGG 2 cut(s) 297, 1353
Eco57I CTGAAG 2 cut(s) 840, 1128
EcoRII CCWGG 1 cut(s) 1573
EcoT14I CCWWGG 2 cut(s) 297, 1353
EcoT22I ATGCAT 2 cut(s) 937, 1285
ErhI CCWWGG 2 cut(s) 297, 1353
FauNDI CATATG 1 cut(s) 1330
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 6 cut(s) 187, 244, 460, 891, 1434, 1596
FokI GGATG 2 cut(s) 314, 1590
Fsp4HI GCNGC 6 cut(s) 187, 244, 460, 891, 1434, 1596
FspBI CTAG 4 cut(s) 708, 1271, 1301, 1454
GlaI GCGC 3 cut(s) 463, 465, 728
GluI GCNGC 6 cut(s) 187, 244, 460, 891, 1434, 1596
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 1 cut(s) 966
HaeIII GGCC 4 cut(s) 137, 189, 337, 704
HapII CCGG 6 cut(s) 129, 205, 327, 399, 511, 1460
HhaI GCGC 3 cut(s) 464, 466, 729
Hin6I GCGC 3 cut(s) 462, 464, 727
HinP1I GCGC 3 cut(s) 462, 464, 727
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HindIII AAGCTT 2 cut(s) 161, 1225
HinfI GANTC 4 cut(s) 4, 66, 1090, 1315
HpaII CCGG 6 cut(s) 129, 205, 327, 399, 511, 1460
HphI GGTGA 5 cut(s) 4, 115, 413, 701, 952
Hpy166II GTNNAC 2 cut(s) 51, 472
Hpy188I TCNGA 7 cut(s) 65, 258, 263, 388, 1045, 1401, 1450
Hpy188III TCNNGA 2 cut(s) 77, 83
Hpy8I GTNNAC 2 cut(s) 51, 472
HpyAV CCTTC 1 cut(s) 679
HpyCH4III ACNGT 3 cut(s) 23, 803, 1057
HpyCH4IV ACGT 1 cut(s) 1061
HpyF10VI GCNNNNNNNGC 7 cut(s) 176, 554, 596, 890, 896, 1357, 1430
HpyF3I CTNAG 4 cut(s) 425, 1323, 1425, 1437
HpySE526I ACGT 1 cut(s) 1061
HspAI GCGC 3 cut(s) 462, 464, 727
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 7 cut(s) 60, 79, 120, 258, 835, 1257, 1294
LmnI GCTCC 5 cut(s) 263, 492, 1357, 1379, 1391
Lsp1109I GCAGC 4 cut(s) 471, 902, 1445, 1582
LweI GCATC 7 cut(s) 306, 388, 436, 714, 1230, 1495, 1568
MaeI CTAG 4 cut(s) 708, 1271, 1301, 1454
MaeII ACGT 1 cut(s) 1061
MaeIII GTNAC 2 cut(s) 940, 1057
MalI GATC 7 cut(s) 62, 81, 122, 260, 837, 1259, 1296
MboI GATC 7 cut(s) 60, 79, 120, 258, 835, 1257, 1294
MboII GAAGA 9 cut(s) 496, 605, 799, 1147, 1154, 1259, 1289, 1549, 1561
MfeI CAATTG 1 cut(s) 1113
MhlI GDGCHC 2 cut(s) 426, 979
MluCI AATT 8 cut(s) 86, 222, 643, 790, 1113, 1206, 1477, 1513
MmeI TCCRAC 4 cut(s) 813, 875, 1379, 1565
MnlI CCTC 8 cut(s) 46, 166, 327, 607, 715, 900, 963, 1318
Mph1103I ATGCAT 2 cut(s) 937, 1285
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 6 cut(s) 393, 636, 717, 822, 1341, 1562
MslI CAYNNNNRTG 2 cut(s) 302, 930
MspA1I CMGCKG 2 cut(s) 246, 893
MspI CCGG 6 cut(s) 129, 205, 327, 399, 511, 1460
MspR9I CCNGG 4 cut(s) 130, 205, 512, 1575
MunI CAATTG 1 cut(s) 1113
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 1 cut(s) 1575
MvnI CGCG 3 cut(s) 464, 729, 1088
MwoI GCNNNNNNNGC 7 cut(s) 176, 554, 596, 890, 896, 1357, 1430
NciI CCSGG 3 cut(s) 130, 205, 512
NcoI CCATGG 2 cut(s) 297, 1353
NdeI CATATG 1 cut(s) 1330
NdeII GATC 7 cut(s) 60, 79, 120, 258, 835, 1257, 1294
NlaIV GGNNCC 3 cut(s) 209, 265, 1359
NmuCI GTSAC 1 cut(s) 940
NsiI ATGCAT 2 cut(s) 937, 1285
NspI RCATGY 5 cut(s) 375, 416, 478, 929, 1287
PauI GCGCGC 1 cut(s) 462
PciI ACATGT 1 cut(s) 474
PctI GAATGC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 3 cut(s) 66, 1090, 1315
PinAI ACCGGT 1 cut(s) 398
PkrI GCNGC 6 cut(s) 188, 245, 461, 892, 1435, 1597
PscI ACATGT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 1573
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 1 cut(s) 1573
PspN4I GGNNCC 3 cut(s) 209, 265, 1359
PspPI GGNCC 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 1508
PteI GCGCGC 1 cut(s) 462
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 4 cut(s) 25, 50, 176, 479
RsaNI GTAC 4 cut(s) 24, 49, 175, 478
RseI CAYNNNNRTG 2 cut(s) 302, 930
SaqAI TTAA 6 cut(s) 393, 636, 717, 822, 1341, 1562
SatI GCNGC 6 cut(s) 187, 244, 460, 891, 1434, 1596
Sau3AI GATC 7 cut(s) 60, 79, 120, 258, 835, 1257, 1294
Sau96I GGNCC 1 cut(s) 136
ScrFI CCNGG 4 cut(s) 130, 205, 512, 1575
SduI GDGCHC 2 cut(s) 426, 979
SfaNI GCATC 7 cut(s) 306, 388, 436, 714, 1230, 1495, 1568
SmiMI CAYNNNNRTG 2 cut(s) 302, 930
SmlI CTYRAG 2 cut(s) 365, 904
SmoI CTYRAG 2 cut(s) 365, 904
Sse9I AATT 8 cut(s) 86, 222, 643, 790, 1113, 1206, 1477, 1513
SsiI CCGC 4 cut(s) 186, 244, 590, 1002
SspMI CTAG 4 cut(s) 708, 1271, 1301, 1454
StyD4I CCNGG 4 cut(s) 128, 203, 510, 1573
StyI CCWWGG 2 cut(s) 297, 1353
TaaI ACNGT 3 cut(s) 23, 803, 1057
TaiI ACGT 1 cut(s) 1064
TaqI TCGA 7 cut(s) 82, 216, 332, 444, 482, 1238, 1306
TasI AATT 8 cut(s) 86, 222, 643, 790, 1113, 1206, 1477, 1513
TatI WGTACW 2 cut(s) 48, 477
TauI GCSGC 2 cut(s) 189, 246
TfiI GAWTC 3 cut(s) 66, 1090, 1315
Tru1I TTAA 6 cut(s) 393, 636, 717, 822, 1341, 1562
Tru9I TTAA 6 cut(s) 393, 636, 717, 822, 1341, 1562
TscAI CASTG 4 cut(s) 316, 364, 1111, 1327
TseFI GTSAC 1 cut(s) 940
TseI GCWGC 4 cut(s) 459, 890, 1433, 1595
Tsp45I GTSAC 1 cut(s) 940
TspDTI ATGAA 5 cut(s) 635, 708, 1029, 1148, 1562
TspRI CASTG 4 cut(s) 316, 364, 1111, 1327
XapI RAATTY 2 cut(s) 222, 790
XceI RCATGY 5 cut(s) 375, 416, 478, 929, 1287
XcmI CCANNNNNNNNNTGG 1 cut(s) 1581
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 4 cut(s) 708, 1271, 1301, 1454
Zsp2I ATGCAT 2 cut(s) 937, 1285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.