RchiOBHm_Chr5g0079971

Pre-mRNA-splicing factor ATP-dependent RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000671
Physical Location & Seq
Forward (+)
85817439 .. 85817927
489 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35431

Sequence Viewer

Length: 372 bp
ATGACTACGAAGGAGTATATGCGTGAGGTAACCGTCGTTGATCCCAAATGGCTTGTGGAACTAGCACCCAGGTTCTTCAAAGTGGCTGACCCTACCAAGATGAGTAAGCGCAAGCGTCAAGAGCGTATTGAACCGCTATATGACAGATACCATGAACCAAACTCTTGGCGTATCCATTTTGGGGTCGAAGAAGAAATCACAGCTCCAGCAGTCTCCATCTGGCTCTCTATTTGGAAACATATTTGCCTCTGCACATCTGGTGCAGAGGAGAGAGAAACAAAGGGCCATTTCTTTTGCAAGGGGCAGAAATTCAATTCCATAAAGTTCCAGTGTTGTTTATTTCTTCACAACCGCTTCTGTTTCAACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

123

Amino Acids

14.73

Weight (kDa)

8.96

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26560
fragaria_vesca FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 134, 352
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 4 cut(s) 79, 131, 313, 364
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 35
AoxI GGCC 1 cut(s) 283
ApoI RAATTY 1 cut(s) 308
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 283
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 70
BciVI GTATCC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 281
BsgI GTGCAG 2 cut(s) 235, 282
BshFI GGCC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 217
BsnI GGCC 1 cut(s) 285
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 134, 352
BspANI GGCC 1 cut(s) 285
BspHI TCATGA 1 cut(s) 368
BspPI GGATC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 113
BstEII GGTNACC 1 cut(s) 28
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 70
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 165
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 113
CciI TCATGA 1 cut(s) 368
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 283
CseI GACGC 1 cut(s) 104
CviAII CATG 2 cut(s) 152, 369
CviJI RGCY 5 cut(s) 52, 86, 203, 223, 285
CviKI_1 RGCY 5 cut(s) 52, 86, 203, 223, 285
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eco91I GGTNACC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 68
FaeI CATG 2 cut(s) 155, 372
FaiI YATR 8 cut(s) 18, 20, 139, 141, 153, 240, 320, 370
FatI CATG 2 cut(s) 151, 368
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 285
HgaI GACGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 155, 372
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 119, 369
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 3 cut(s) 252, 263, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
Hsp92II CATG 2 cut(s) 155, 372
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 6 cut(s) 55, 82, 205, 219, 243, 341
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 4 cut(s) 67, 200, 203, 335
MluCI AATT 2 cut(s) 308, 313
MnlI CCTC 3 cut(s) 19, 257, 259
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 155, 372
PagI TCATGA 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 68
PspEI GGTNACC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 68
PspPI GGNCC 1 cut(s) 283
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 70
SetI ASST 3 cut(s) 30, 74, 205
Sse9I AATT 2 cut(s) 308, 313
SsiI CCGC 2 cut(s) 134, 352
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 186
TasI AATT 2 cut(s) 308, 313
TscAI CASTG 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 335
XapI RAATTY 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.