RchiOBHm_Chr7g0219091

Pre-mRNA-splicing factor ATP-dependent RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000671
Physical Location & Seq
Forward (+)
37334906 .. 37335771
866 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19610

Sequence Viewer

Length: 642 bp
ATGATTAGCTTTTTCCTTGTGCTGTATGGAGTTCTTGTGTTATGTAGCAGAAGAGCTTTACCAATCTGGTATAAACTGGATGTTGTGAGTGCTGGAAAGAATTTTACACAGATCAGGAAGGCAATTACGGCGGGATTTTTCTTCCATGATGCTAGAAAGGACCCTCAGGAGGGGTATAGAACCTTAGTGGAGAACCAGCCAGTTTATATCCATCCAAGCAGTGCGCTCTTCCAGAGACAACCAGATTGGATCATCTACCATGAGTTGGTTATGACTACGAAGGAGTATATGCGTGAGGTAACCGTCGTTGATCCCAAATGGCTTGTGGAACTGGCACCCAGGTTCTTCAAAGTGGCTGACCCTACCAAGATGAGTAAGCGCAAGCGTCAAGAGCGTATTGAACCGCTATATGACAGATACCATGAACCAAACTCTTGGCGTATCCATTTTGGGGTCGAAGAAGAAATCACAGCTCCAGCAGTCTCCATCTGGCTCTCTATTTGGAAACATATTTGCCTCTGCACATCTGGTGCAGAGGAGAGAGAAACAAAGGGCCATTTCTTTTGCAAGGGGCAGAAATTCAATTCCATAAAGTTCCAGTGTTGTTTATTTCTTCACAACCGCTTCTGTTTCAACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

213

Amino Acids

25.25

Weight (kDa)

9.15

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_NTP_bind PF07717 38 - 114 9.1e-27 Oligonucleotide/oligosaccharide-binding (OB)-fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26560
fragaria_vesca FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 265
AciI CCGC 3 cut(s) 131, 404, 622
AclWI GGATC 2 cut(s) 257, 305
AcsI RAATTY 2 cut(s) 100, 578
AfiI CCNNNNNNNGG 4 cut(s) 169, 170, 265, 451
AgsI TTSAA 4 cut(s) 349, 401, 583, 634
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 3 cut(s) 9, 56, 473
AluI AGCT 3 cut(s) 9, 56, 473
Alw26I GTCTC 2 cut(s) 229, 487
AlwI GGATC 2 cut(s) 257, 305
AoxI GGCC 1 cut(s) 553
ApoI RAATTY 2 cut(s) 100, 578
AspLEI GCGC 2 cut(s) 226, 381
AspS9I GGNCC 2 cut(s) 160, 553
AvaII GGWCC 1 cut(s) 160
AxyI CCTNAGG 1 cut(s) 165
BanI GGYRCC 1 cut(s) 334
BccI CCATC 2 cut(s) 219, 494
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 340
BciVI GTATCC 1 cut(s) 452
BcoDI GTCTC 2 cut(s) 229, 487
BfaI CTAG 1 cut(s) 153
BfuI GTATCC 1 cut(s) 452
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 160, 553
BmiI GGNNCC 2 cut(s) 162, 336
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 338
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 170, 265, 451
Bse1I ACTGG 4 cut(s) 81, 200, 336, 598
Bse21I CCTNAGG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 2 cut(s) 85, 211
BseLI CCNNNNNNNGG 4 cut(s) 169, 170, 265, 451
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 4 cut(s) 81, 200, 336, 598
BseRI GAGGAG 1 cut(s) 551
BsgI GTGCAG 2 cut(s) 505, 552
BshFI GGCC 1 cut(s) 555
BshNI GGYRCC 1 cut(s) 334
BslI CCNNNNNNNGG 4 cut(s) 169, 170, 265, 451
BsmAI GTCTC 2 cut(s) 229, 487
BsnI GGCC 1 cut(s) 555
Bsp143I GATC 3 cut(s) 111, 249, 310
BspACI CCGC 3 cut(s) 131, 404, 622
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 1 cut(s) 178
BspHI TCATGA 1 cut(s) 638
BspLI GGNNCC 2 cut(s) 162, 336
BspPI GGATC 2 cut(s) 257, 305
BspQI GCTCTTC 2 cut(s) 46, 233
BspT107I GGYRCC 1 cut(s) 334
BsrI ACTGG 4 cut(s) 81, 200, 336, 598
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 3 cut(s) 111, 249, 310
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 2 cut(s) 46, 233
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 2 cut(s) 165, 184
BstEII GGTNACC 1 cut(s) 298
BstF5I GGATG 2 cut(s) 85, 211
BstHHI GCGC 2 cut(s) 226, 381
BstKTI GATC 3 cut(s) 114, 252, 313
BstMAI GTCTC 2 cut(s) 229, 487
BstMBI GATC 3 cut(s) 111, 249, 310
BstMWI GCNNNNNNNGC 2 cut(s) 128, 391
BstNI CCWGG 1 cut(s) 340
BstPI GGTNACC 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 338
BstXI CCANNNNNNTGG 1 cut(s) 435
Bsu36I CCTNAGG 1 cut(s) 165
BsuI GTATCC 1 cut(s) 452
BsuRI GGCC 1 cut(s) 555
BtsCI GGATG 2 cut(s) 85, 211
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 226, 605
Cac8I GCNNGC 1 cut(s) 383
CciI TCATGA 1 cut(s) 638
CfoI GCGC 2 cut(s) 226, 381
Cfr13I GGNCC 2 cut(s) 160, 553
CseI GACGC 1 cut(s) 374
CviAII CATG 4 cut(s) 146, 260, 422, 639
CviJI RGCY 8 cut(s) 9, 56, 199, 322, 356, 473, 493, 555
CviKI_1 RGCY 8 cut(s) 9, 56, 199, 322, 356, 473, 493, 555
DdeI CTNAG 2 cut(s) 165, 184
DpnI GATC 3 cut(s) 113, 251, 312
DpnII GATC 3 cut(s) 111, 249, 310
Eam1104I CTCTTC 2 cut(s) 46, 233
EarI CTCTTC 2 cut(s) 46, 233
Eco47I GGWCC 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 338
FaeI CATG 4 cut(s) 149, 263, 425, 642
FatI CATG 4 cut(s) 145, 259, 421, 638
FauI CCCGC 1 cut(s) 124
FokI GGATG 2 cut(s) 92, 198
FspBI CTAG 1 cut(s) 153
GlaI GCGC 2 cut(s) 225, 380
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 1 cut(s) 555
HgaI GACGC 1 cut(s) 374
HhaI GCGC 2 cut(s) 226, 381
Hin1II CATG 4 cut(s) 149, 263, 425, 642
Hin6I GCGC 2 cut(s) 224, 379
HinP1I GCGC 2 cut(s) 224, 379
Hpy188III TCNNGA 5 cut(s) 115, 167, 232, 389, 639
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 112, 274
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 522, 533, 567
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 391
HpyF3I CTNAG 2 cut(s) 165, 184
Hsp92II CATG 4 cut(s) 149, 263, 425, 642
HspAI GCGC 2 cut(s) 224, 379
Kzo9I GATC 3 cut(s) 111, 249, 310
LguI GCTCTTC 2 cut(s) 46, 233
LmnI GCTCC 1 cut(s) 478
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 298
MalI GATC 3 cut(s) 113, 251, 312
MboI GATC 3 cut(s) 111, 249, 310
MboII GAAGA 7 cut(s) 63, 133, 220, 337, 470, 473, 605
MluCI AATT 4 cut(s) 100, 123, 578, 583
MnlI CCTC 5 cut(s) 163, 174, 289, 527, 529
MspR9I CCNGG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 128, 391
NdeII GATC 3 cut(s) 111, 249, 310
NlaIII CATG 4 cut(s) 149, 263, 425, 642
NlaIV GGNNCC 2 cut(s) 162, 336
PagI TCATGA 1 cut(s) 638
PciSI GCTCTTC 2 cut(s) 46, 233
PflMI CCANNNNNTGG 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 338
PspEI GGTNACC 1 cut(s) 298
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 162, 336
PspPI GGNCC 2 cut(s) 160, 553
PspPPI RGGWCCY 1 cut(s) 160
SapI GCTCTTC 2 cut(s) 46, 233
Sau3AI GATC 3 cut(s) 111, 249, 310
Sau96I GGNCC 2 cut(s) 160, 553
ScrFI CCNGG 1 cut(s) 340
SetI ASST 6 cut(s) 11, 58, 185, 300, 344, 475
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 160
Sse9I AATT 4 cut(s) 100, 123, 578, 583
SsiI CCGC 3 cut(s) 131, 404, 622
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 456
TasI AATT 4 cut(s) 100, 123, 578, 583
TscAI CASTG 2 cut(s) 226, 605
TspDTI ATGAA 1 cut(s) 438
TspRI CASTG 2 cut(s) 226, 605
Van91I CCANNNNNTGG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 2 cut(s) 100, 578
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.