Rh2AG475800

Pre-mRNA-splicing factor ATP-dependent RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000671
Physical Location & Seq
Reverse (-)
69457147 .. 69479985
22839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG475800.1

Sequence Viewer

Length: 1125 bp
ATGGATAAAGAATCTATGCTACCACTGCCGGCACTCATATGGCAATGTGGCATAAAAGACATCAAAAAAACGTCTCCAACATTGATTTTAGGTAGCAGAAGAGCTTTACCAATCTGGTATAAACTGGATGTTGTGAGTGCTGGAAAGAATTTTACACAGATCAGGAAGGCAATTACGGCGGGATTTTTCTTCCATGATGCTAGAAAGGACCCTCAAGAGGGGTATAGAACCTTAGTGGAGAACCAGCCAGTTTATATCCATCCAAGCAGTGCGCTCTTCCAGAGACAACCAGATTGGATCATCTACCATGAGTTGGTTATGACTACGAAGGAGTATATGCGTGAGGTAACCGTCGTTGATCCCAAATGGCTTGTGGAACTAGCACCCAGGTTCTTCAAAGTGGCTGACCCTACCAAGATGAGTAAGCGCAAGCGTCAAGAGCGTATTGAACCGCTATATGACAGATACCATGAACCAAACTCTTGGCGTATCCATTTTGGGGTCGAAGAAGAAATCACAGCTCCAGCAGTCTCCATCTGGCTCTCTATTTGGAAACATATTTGCCTCTGCACATCTGGTGCAGAGGAGAGAGAAACAAAGGGCCATTTCTTTTGCAAGGGGCAGAAATTCAATTCCATAAACCCTCTCAACCCTCACCATTCGAAGCCGCGGCGACCTCAGCTCGAGATGGGTGAAGCAGTCAAGGTTGTGGTTCCAGAGTCTGTCCTAAAGAAGAGGAAGAGAGAGGAGGAATGGGCCTTGGCAAAGAAGCAGGGGCTAGAAGCTGCCAAGAAATTGAACTCTGAGAATAGGAAGCTTATTTACAACAAATCCAAACAGTACACCAAGGAGTACGCAGAGAAGGACAATGAATTGGTCCGGTTGAAGCGTGAAGCAAGGCTGAAAGGAGGATTCTATGTCGAGCCAGAGTCTAAGCTCTTGTTTATCATTCGTATCCGTGGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAGCTTTTGCGTTTGAGACAGGTAATTCTCATACCTTTGGAAATATTGATGGTTTACCTCCAATGTAGCTGTGTTGTTTGTTTGGTAGTTGATTGGAATCTGCTATTCCTTCATGGTAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

374

Amino Acids

43.79

Weight (kDa)

9.64

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_NTP_bind PF07717 54 - 130 2.6e-26 Oligonucleotide/oligosaccharide-binding (OB)-fold
Ribosomal_L30_N PF08079 238 - 309 6.9e-22 Ribosomal L30 N-terminal domain
Ribosomal_L30 PF00327 314 - 341 1.7e-06 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26560
fragaria_vesca FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 313
AccII CGCG 1 cut(s) 670
AciI CCGC 4 cut(s) 179, 452, 668, 670
AclWI GGATC 3 cut(s) 305, 353, 971
AcsI RAATTY 2 cut(s) 148, 626
AfaI GTAC 2 cut(s) 842, 854
AfiI CCNNNNNNNGG 4 cut(s) 217, 218, 313, 499
AgsI TTSAA 5 cut(s) 397, 449, 631, 799, 886
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 8 cut(s) 104, 521, 682, 785, 817, 937, 1003, 1068
AluI AGCT 8 cut(s) 104, 521, 682, 785, 817, 937, 1003, 1068
Alw26I GTCTC 4 cut(s) 78, 277, 535, 1009
AlwI GGATC 3 cut(s) 305, 353, 971
AlwNI CAGNNNCTG 1 cut(s) 722
Ama87I CYCGRG 1 cut(s) 683
AoxI GGCC 2 cut(s) 601, 756
ApeKI GCWGC 2 cut(s) 785, 1000
ApoI RAATTY 2 cut(s) 148, 626
AspLEI GCGC 2 cut(s) 274, 429
AspS9I GGNCC 4 cut(s) 208, 601, 756, 877
AsuHPI GGTGA 2 cut(s) 647, 704
AsuII TTCGAA 1 cut(s) 662
AvaI CYCGRG 1 cut(s) 683
AvaII GGWCC 2 cut(s) 208, 877
BarI GAAGNNNNNNTAC 2 cut(s) 806, 838
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 2 cut(s) 772, 1012
BccI CCATC 4 cut(s) 267, 542, 682, 1042
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 388
BciVI GTATCC 2 cut(s) 500, 965
BcoDI GTCTC 4 cut(s) 78, 277, 535, 1009
BfaI CTAG 3 cut(s) 201, 380, 779
BfuI GTATCC 2 cut(s) 500, 965
BglII AGATCT 1 cut(s) 993
BisI GCNGC 4 cut(s) 668, 671, 786, 1001
BlsI GCNGC 4 cut(s) 669, 672, 787, 1002
Bme1390I CCNGG 1 cut(s) 388
Bme18I GGWCC 2 cut(s) 208, 877
BmeT110I CYCGRG 1 cut(s) 683
BmgT120I GGNCC 4 cut(s) 208, 601, 756, 877
BmiI GGNNCC 2 cut(s) 210, 714
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 662
BpuEI CTTGAG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 1095
BsaJI CCNNGG 5 cut(s) 386, 668, 759, 846, 958
BsaWI WCCGGW 1 cut(s) 879
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 218, 313, 499
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 129, 248
Bse3DI GCAATG 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 1095
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 5 cut(s) 386, 668, 759, 846, 958
BseGI GGATG 2 cut(s) 133, 259
BseJI GATNNNNATC 1 cut(s) 1095
BseLI CCNNNNNNNGG 4 cut(s) 217, 218, 313, 499
BseMI GCAATG 1 cut(s) 50
BseMII CTCAG 2 cut(s) 692, 795
BseNI ACTGG 2 cut(s) 129, 248
BseRI GAGGAG 2 cut(s) 599, 761
BseXI GCAGC 2 cut(s) 772, 1012
BsgI GTGCAG 2 cut(s) 553, 600
Bsh1236I CGCG 1 cut(s) 670
BshFI GGCC 2 cut(s) 603, 758
BsiHKCI CYCGRG 1 cut(s) 683
BsiSI CCGG 2 cut(s) 29, 880
BslI CCNNNNNNNGG 4 cut(s) 217, 218, 313, 499
BsmAI GTCTC 4 cut(s) 78, 277, 535, 1009
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 2 cut(s) 603, 758
BsoBI CYCGRG 1 cut(s) 683
Bsp119I TTCGAA 1 cut(s) 662
Bsp143I GATC 5 cut(s) 159, 297, 358, 976, 993
BspACI CCGC 4 cut(s) 179, 452, 668, 670
BspANI GGCC 2 cut(s) 603, 758
BspCNI CTCAG 2 cut(s) 691, 796
BspFNI CGCG 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 210, 714
BspPI GGATC 3 cut(s) 305, 353, 971
BspQI GCTCTTC 2 cut(s) 94, 281
BspT104I TTCGAA 1 cut(s) 662
BsrDI GCAATG 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 2 cut(s) 129, 248
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 5 cut(s) 386, 668, 759, 846, 958
BssMI GATC 5 cut(s) 159, 297, 358, 976, 993
BssT1I CCWWGG 2 cut(s) 759, 846
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 352, 840
Bst6I CTCTTC 4 cut(s) 94, 281, 728, 734
BstAPI GCANNNNNTGC 1 cut(s) 1006
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 30, 431
BstDEI CTNAG 4 cut(s) 232, 678, 804, 933
BstDSI CCRYGG 2 cut(s) 668, 958
BstEII GGTNACC 1 cut(s) 346
BstF5I GGATG 2 cut(s) 133, 259
BstFNI CGCG 1 cut(s) 670
BstHHI GCGC 2 cut(s) 274, 429
BstKTI GATC 5 cut(s) 162, 300, 361, 979, 996
BstMAI GTCTC 4 cut(s) 78, 277, 535, 1009
BstMBI GATC 5 cut(s) 159, 297, 358, 976, 993
BstMWI GCNNNNNNNGC 5 cut(s) 25, 176, 439, 679, 1006
BstNI CCWGG 1 cut(s) 388
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 386
BstUI CGCG 1 cut(s) 670
BstV1I GCAGC 2 cut(s) 772, 1012
BstX2I RGATCY 1 cut(s) 993
BstXI CCANNNNNNTGG 1 cut(s) 483
BstYI RGATCY 1 cut(s) 993
BsuI GTATCC 2 cut(s) 500, 965
BsuRI GGCC 2 cut(s) 603, 758
BtgI CCRYGG 2 cut(s) 668, 958
BtsCI GGATG 2 cut(s) 133, 259
BtsI GCAGTG 2 cut(s) 23, 274
BtsIMutI CAGTG 2 cut(s) 23, 274
Cac8I GCNNGC 2 cut(s) 30, 431
CaiI CAGNNNCTG 1 cut(s) 722
CfoI GCGC 2 cut(s) 274, 429
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 4 cut(s) 208, 601, 756, 877
Cfr42I CCGCGG 1 cut(s) 671
CseI GACGC 1 cut(s) 422
Csp6I GTAC 2 cut(s) 841, 853
CviAII CATG 4 cut(s) 194, 308, 470, 1112
CviQI GTAC 2 cut(s) 841, 853
DdeI CTNAG 4 cut(s) 232, 678, 804, 933
DpnI GATC 5 cut(s) 161, 299, 360, 978, 995
DpnII GATC 5 cut(s) 159, 297, 358, 976, 993
Eam1104I CTCTTC 4 cut(s) 94, 281, 728, 734
EarI CTCTTC 4 cut(s) 94, 281, 728, 734
Eco130I CCWWGG 2 cut(s) 759, 846
Eco47I GGWCC 2 cut(s) 208, 877
Eco88I CYCGRG 1 cut(s) 683
Eco91I GGTNACC 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 386
EcoT14I CCWWGG 2 cut(s) 759, 846
ErhI CCWWGG 2 cut(s) 759, 846
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 4 cut(s) 197, 311, 473, 1115
FalI AAGNNNNNCTT 2 cut(s) 980, 1012
FatI CATG 4 cut(s) 193, 307, 469, 1111
FauI CCCGC 1 cut(s) 172
FauNDI CATATG 1 cut(s) 38
Fnu4HI GCNGC 4 cut(s) 668, 671, 786, 1001
FokI GGATG 2 cut(s) 140, 246
Fsp4HI GCNGC 4 cut(s) 668, 671, 786, 1001
FspBI CTAG 3 cut(s) 201, 380, 779
GlaI GCGC 2 cut(s) 273, 428
GluI GCNGC 4 cut(s) 668, 671, 786, 1001
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 603, 758
HapII CCGG 2 cut(s) 29, 880
HgaI GACGC 1 cut(s) 422
HhaI GCGC 2 cut(s) 274, 429
Hin1II CATG 4 cut(s) 197, 311, 473, 1115
Hin6I GCGC 2 cut(s) 272, 427
HinP1I GCGC 2 cut(s) 272, 427
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 5 cut(s) 11, 719, 912, 929, 1096
HpaII CCGG 2 cut(s) 29, 880
HphI GGTGA 2 cut(s) 647, 704
Hpy166II GTNNAC 2 cut(s) 843, 1054
Hpy188I TCNGA 1 cut(s) 805
Hpy188III TCNNGA 6 cut(s) 163, 215, 280, 437, 685, 716
Hpy8I GTNNAC 2 cut(s) 843, 1054
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 4 cut(s) 160, 322, 856, 1118
HpyCH4III ACNGT 2 cut(s) 352, 840
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 4 cut(s) 570, 581, 615, 1000
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 176, 439, 679, 1006
HpyF3I CTNAG 4 cut(s) 232, 678, 804, 933
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 4 cut(s) 197, 311, 473, 1115
HspAI GCGC 2 cut(s) 272, 427
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
KspI CCGCGG 1 cut(s) 671
Kzo9I GATC 5 cut(s) 159, 297, 358, 976, 993
LguI GCTCTTC 2 cut(s) 94, 281
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 2 cut(s) 772, 1012
LweI GCATC 1 cut(s) 187
MaeI CTAG 3 cut(s) 201, 380, 779
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 346
MalI GATC 5 cut(s) 161, 299, 360, 978, 995
MboI GATC 5 cut(s) 159, 297, 358, 976, 993
MboII GAAGA 9 cut(s) 111, 181, 268, 385, 518, 521, 745, 751, 1003
MflI RGATCY 1 cut(s) 993
MluCI AATT 7 cut(s) 148, 171, 626, 631, 794, 872, 1023
MlyI GAGTC 2 cut(s) 728, 938
MmeI TCCRAC 1 cut(s) 101
MroNI GCCGGC 1 cut(s) 28
MslI CAYNNNNRTG 1 cut(s) 37
MspA1I CMGCKG 1 cut(s) 670
MspI CCGG 2 cut(s) 29, 880
MspR9I CCNGG 1 cut(s) 388
MvaI CCWGG 1 cut(s) 388
MvnI CGCG 1 cut(s) 670
MwoI GCNNNNNNNGC 5 cut(s) 25, 176, 439, 679, 1006
NaeI GCCGGC 1 cut(s) 30
NdeI CATATG 1 cut(s) 38
NdeII GATC 5 cut(s) 159, 297, 358, 976, 993
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 4 cut(s) 197, 311, 473, 1115
NlaIV GGNNCC 2 cut(s) 210, 714
NspV TTCGAA 1 cut(s) 662
PaeR7I CTCGAG 1 cut(s) 683
PciSI GCTCTTC 2 cut(s) 94, 281
PdiI GCCGGC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 11, 912, 1096
PflMI CCANNNNNTGG 1 cut(s) 313
PkrI GCNGC 4 cut(s) 669, 672, 787, 1002
PleI GAGTC 2 cut(s) 727, 937
PpsI GAGTC 2 cut(s) 727, 937
PpuMI RGGWCCY 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 386
PspEI GGTNACC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 2 cut(s) 210, 714
PspPI GGNCC 4 cut(s) 208, 601, 756, 877
PspPPI RGGWCCY 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 1 cut(s) 993
RsaI GTAC 2 cut(s) 842, 854
RsaNI GTAC 2 cut(s) 841, 853
RseI CAYNNNNRTG 1 cut(s) 37
SacII CCGCGG 1 cut(s) 671
SapI GCTCTTC 2 cut(s) 94, 281
SatI GCNGC 4 cut(s) 668, 671, 786, 1001
Sau3AI GATC 5 cut(s) 159, 297, 358, 976, 993
Sau96I GGNCC 4 cut(s) 208, 601, 756, 877
SchI GAGTC 2 cut(s) 728, 938
ScrFI CCNGG 1 cut(s) 388
SfaNI GCATC 1 cut(s) 187
Sfr274I CTCGAG 1 cut(s) 683
Sfr303I CCGCGG 1 cut(s) 671
SfuI TTCGAA 1 cut(s) 662
SgrBI CCGCGG 1 cut(s) 671
SinI GGWCC 2 cut(s) 208, 877
SlaI CTCGAG 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 213, 683
SmoI CTYRAG 2 cut(s) 213, 683
Sse9I AATT 7 cut(s) 148, 171, 626, 631, 794, 872, 1023
SsiI CCGC 4 cut(s) 179, 452, 668, 670
SspI AATATT 1 cut(s) 1044
SspMI CTAG 3 cut(s) 201, 380, 779
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 2 cut(s) 759, 846
TaaI ACNGT 2 cut(s) 352, 840
TaiI ACGT 1 cut(s) 74
TaqI TCGA 4 cut(s) 504, 662, 684, 921
TasI AATT 7 cut(s) 148, 171, 626, 631, 794, 872, 1023
TatI WGTACW 1 cut(s) 840
TauI GCSGC 2 cut(s) 670, 673
TfiI GAWTC 3 cut(s) 11, 912, 1096
TscAI CASTG 2 cut(s) 30, 274
TseI GCWGC 2 cut(s) 785, 1000
TspDTI ATGAA 3 cut(s) 486, 885, 1100
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 2 cut(s) 30, 274
Van91I CCANNNNNTGG 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 208, 877
XapI RAATTY 2 cut(s) 148, 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XhoI CTCGAG 1 cut(s) 683
XspI CTAG 3 cut(s) 201, 380, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.